#------------------------------------------------------------------------------ #$Date: 2025-08-19 11:43:10 +0100 (Tue, 19 Aug 2025) $ #$Revision: 301803 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/66/2206677.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2206677 loop_ _publ_author_name 'Steyl, Gideon' _publ_section_title ; Bis(tropolonato)palladium(II) ; _journal_coeditor_code CV6570 _journal_issue 9 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first m1860 _journal_page_last m1862 _journal_paper_doi 10.1107/S1600536805026619 _journal_volume 61 _journal_year 2005 _chemical_formula_iupac '[Pd (C7 H5 O2)2]' _chemical_formula_moiety 'C14 H10 O4 Pd' _chemical_formula_sum 'C14 H10 O4 Pd' _chemical_formula_weight 348.62 _chemical_name_systematic ; Bis(tropolonato)palladium(II) ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens 'riding model' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.27(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 7.3474(15) _cell_length_b 10.972(2) _cell_length_c 15.186(3) _cell_measurement_reflns_used 1024 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 27.719 _cell_measurement_theta_min 3.2625 _cell_volume 1224.2(4) _computing_cell_refinement 'SAINT-Plus (Bruker, 1999)' _computing_data_collection 'SMART (Bruker, 1998)' _computing_data_reduction 'SHELXTL (Bruker, 1998)' _computing_molecular_graphics 'DIAMOND (Brandenburg, 2000)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_detector_area_resol_mean '512 x 512' _diffrn_measured_fraction_theta_full 0.992 _diffrn_measured_fraction_theta_max 0.992 _diffrn_measurement_device_type 'Bruker SMART CCD area-detector' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0224 _diffrn_reflns_av_sigmaI/netI 0.0284 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_number 8234 _diffrn_reflns_theta_full 28.28 _diffrn_reflns_theta_max 28.28 _diffrn_reflns_theta_min 2.29 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 'First 80 frames repeated after collection' _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 1.522 _exptl_absorpt_correction_T_max 0.888 _exptl_absorpt_correction_T_min 0.844 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1998)' _exptl_crystal_colour Red _exptl_crystal_density_diffrn 1.891 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Needle _exptl_crystal_F_000 688 _exptl_crystal_size_max 0.54 _exptl_crystal_size_mid 0.09 _exptl_crystal_size_min 0.08 _refine_diff_density_max 0.385 _refine_diff_density_min -0.373 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.046 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 172 _refine_ls_number_reflns 3015 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.046 _refine_ls_R_factor_all 0.0430 _refine_ls_R_factor_gt 0.0289 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0346P)^2^+0.851P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0706 _refine_ls_wR_factor_ref 0.0754 _reflns_number_gt 2412 _reflns_number_total 3015 _reflns_threshold_expression I>2\s(I) _cod_data_source_file cv6570.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_geom_bond_publ_flag' value 'YES' changed to 'yes' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (8 times). '_geom_angle_publ_flag' value 'YES' changed to 'yes' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (6 times). '_geom_torsion_publ_flag' value 'YES' changed to 'yes' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (4 times). Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_geom_bond_publ_flag' value 'YES' changed to 'yes' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (8 times). '_geom_angle_publ_flag' value 'YES' changed to 'yes' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (6 times). '_geom_torsion_publ_flag' value 'YES' changed to 'yes' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (4 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 1224.3(4) _cod_original_sg_symbol_Hall '-p 2ybc' _cod_original_sg_symbol_H-M 'P 21/c' _cod_database_code 2206677 _cod_database_fobs_code 2206677 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol Pd 0.62134(3) 0.11506(2) 0.427529(15) 0.03689(9) Uani d . 1 Pd O11 0.6511(3) 0.2541(2) 0.51047(14) 0.0439(5) Uani d . 1 O O12 0.3627(3) 0.1619(2) 0.43689(15) 0.0458(5) Uani d . 1 O C11 0.4970(4) 0.3026(3) 0.53307(19) 0.0377(6) Uani d . 1 C C12 0.3348(4) 0.2510(3) 0.49170(18) 0.0350(6) Uani d . 1 C C13 0.1550(4) 0.2872(3) 0.5063(2) 0.0406(7) Uani d . 1 C H13 0.0680 0.2422 0.4759 0.049 Uiso calc R 1 H C14 0.0854(5) 0.3788(3) 0.5585(2) 0.0456(7) Uani d . 1 C H14 -0.0406 0.3869 0.5569 0.055 Uiso calc R 1 H C15 0.1748(5) 0.4599(3) 0.6125(2) 0.0522(9) Uani d . 1 C H15 0.1027 0.5167 0.6414 0.063 Uiso calc R 1 H C16 0.3609(5) 0.4666(3) 0.6286(3) 0.0579(10) Uani d . 1 C H16 0.3966 0.5263 0.6686 0.069 Uiso calc R 1 H C17 0.4998(5) 0.3981(3) 0.5942(2) 0.0502(8) Uani d . 1 C H17 0.6151 0.4185 0.6150 0.060 Uiso calc R 1 H O21 0.5973(3) -0.0228(2) 0.34190(15) 0.0465(5) Uani d . 1 O O22 0.8804(3) 0.0704(2) 0.42029(14) 0.0412(5) Uani d . 1 O C21 0.7544(4) -0.0721(3) 0.32274(19) 0.0349(6) Uani d . 1 C C22 0.9124(4) -0.0211(2) 0.36843(17) 0.0328(6) Uani d . 1 C C23 1.0928(4) -0.0598(3) 0.36072(19) 0.0370(6) Uani d . 1 C H23 1.1759 -0.0163 0.3948 0.044 Uiso calc R 1 H C24 1.1680(4) -0.1522(3) 0.3107(2) 0.0410(7) Uani d . 1 C H24 1.2932 -0.1619 0.3165 0.049 Uiso calc R 1 H C25 1.0834(5) -0.2321(3) 0.2534(2) 0.0455(8) Uani d . 1 C H25 1.1583 -0.2888 0.2261 0.055 Uiso calc R 1 H C26 0.9006(5) -0.2379(3) 0.2319(2) 0.0453(8) Uani d . 1 C H26 0.8692 -0.2976 0.1911 0.054 Uiso calc R 1 H C27 0.7571(4) -0.1672(3) 0.2623(2) 0.0408(7) Uani d . 1 C H27 0.6441 -0.1869 0.2383 0.049 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Pd 0.03474(13) 0.03666(13) 0.03923(14) 0.00059(10) -0.00333(9) -0.00333(10) O11 0.0346(11) 0.0464(12) 0.0506(13) 0.0016(10) -0.0059(9) -0.0134(10) O12 0.0402(12) 0.0458(12) 0.0515(13) 0.0019(10) -0.0085(10) -0.0140(11) C11 0.0365(16) 0.0372(15) 0.0393(16) -0.0010(13) -0.0017(12) 0.0007(13) C12 0.0385(15) 0.0333(14) 0.0331(15) -0.0017(12) -0.0049(12) 0.0010(12) C13 0.0375(16) 0.0438(17) 0.0403(16) -0.0018(14) -0.0055(13) -0.0021(14) C14 0.0378(17) 0.0522(19) 0.0468(18) 0.0076(15) 0.0013(13) 0.0020(15) C15 0.0464(19) 0.054(2) 0.057(2) 0.0095(16) 0.0080(16) -0.0132(17) C16 0.058(2) 0.053(2) 0.063(2) 0.0007(18) 0.0028(18) -0.0251(18) C17 0.0427(18) 0.050(2) 0.058(2) -0.0085(15) -0.0043(15) -0.0164(16) O21 0.0374(12) 0.0486(13) 0.0533(13) 0.0034(10) -0.0063(10) -0.0153(11) O22 0.0369(11) 0.0412(11) 0.0454(12) -0.0001(9) -0.0024(9) -0.0090(10) C21 0.0356(15) 0.0327(14) 0.0364(15) -0.0007(12) -0.0036(12) 0.0022(12) C22 0.0421(16) 0.0293(14) 0.0271(13) -0.0046(12) -0.0013(11) 0.0014(11) C23 0.0364(16) 0.0369(16) 0.0375(16) -0.0028(13) -0.0033(12) 0.0000(12) C24 0.0352(16) 0.0459(17) 0.0421(17) 0.0023(13) 0.0032(13) 0.0030(14) C25 0.0507(19) 0.0417(18) 0.0443(18) 0.0077(15) 0.0070(15) -0.0059(14) C26 0.058(2) 0.0389(17) 0.0394(17) -0.0010(15) -0.0035(14) -0.0073(14) C27 0.0409(17) 0.0408(16) 0.0407(16) -0.0033(14) -0.0103(13) -0.0043(14) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O11 Pd O12 81.83(9) yes O21 Pd O22 81.86(9) yes O11 Pd O21 178.31(9) yes O12 Pd O21 99.28(9) yes O11 Pd O22 97.04(9) yes O12 Pd O22 178.83(8) yes C12 O12 Pd 113.36(18) ? C22 O22 Pd 113.81(18) ? C21 O21 Pd 112.42(18) ? C11 O11 Pd 112.84(19) ? O22 C22 C23 117.4(3) ? O22 C22 C21 116.0(3) ? C23 C22 C21 126.6(3) ? O11 C11 C17 118.2(3) ? O11 C11 C12 116.0(3) ? C17 C11 C12 125.8(3) ? C24 C25 C26 127.7(3) ? C24 C25 H25 116.1 ? C26 C25 H25 116.1 ? C16 C17 C11 130.8(3) ? C16 C17 H17 114.6 ? C11 C17 H17 114.6 ? O12 C12 C13 117.9(3) ? O12 C12 C11 115.9(3) ? C13 C12 C11 126.3(3) ? C21 C27 C26 130.7(3) ? C21 C27 H27 114.7 ? C26 C27 H27 114.7 ? O21 C21 C27 118.2(3) ? O21 C21 C22 115.8(3) ? C27 C21 C22 126.0(3) ? C24 C23 C22 130.6(3) ? C24 C23 H23 114.7 ? C22 C23 H23 114.7 ? C25 C24 C23 129.2(3) ? C25 C24 H24 115.4 ? C23 C24 H24 115.4 ? C25 C26 C27 129.3(3) ? C25 C26 H26 115.3 ? C27 C26 H26 115.3 ? C15 C14 C13 129.5(3) ? C15 C14 H14 115.2 ? C13 C14 H14 115.2 ? C14 C15 C16 127.3(3) ? C14 C15 H15 116.4 ? C16 C15 H15 116.4 ? C17 C16 C15 129.6(3) ? C17 C16 H16 115.2 ? C15 C16 H16 115.2 ? C14 C13 C12 130.7(3) ? C14 C13 H13 114.7 ? C12 C13 H13 114.7 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag Pd O11 1.990(2) yes Pd O12 1.974(2) yes Pd O21 2.002(2) yes Pd O22 1.969(2) yes O11 C11 1.299(4) yes O12 C12 1.301(4) yes O21 C21 1.309(4) yes O22 C22 1.298(3) yes C22 C23 1.397(4) ? C22 C21 1.461(4) ? C11 C17 1.400(4) ? C11 C12 1.459(4) ? C25 C24 1.381(5) ? C25 C26 1.382(4) ? C25 H25 0.9300 ? C17 C16 1.373(5) ? C17 H17 0.9300 ? C12 C13 1.398(4) ? C27 C21 1.390(4) ? C27 C26 1.390(5) ? C27 H27 0.9300 ? C23 C24 1.383(4) ? C23 H23 0.9300 ? C24 H24 0.9300 ? C26 H26 0.9300 ? C14 C15 1.375(5) ? C14 C13 1.379(4) ? C14 H14 0.9300 ? C15 C16 1.390(5) ? C15 H15 0.9300 ? C16 H16 0.9300 ? C13 H13 0.9300 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA C23 H23 O12 1_655 0.93 2.47 3.342(4) 156 C13 H13 O22 1_455 0.93 2.48 3.378(4) 162 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O11 Pd O12 C12 -2.8(2) ? O21 Pd O12 C12 178.5(2) ? O11 Pd O22 C22 -179.44(19) ? O21 Pd O22 C22 -0.7(2) ? O22 Pd O21 C21 -0.7(2) ? O12 Pd O21 C21 179.6(2) ? O22 Pd O11 C11 -176.9(2) ? O12 Pd O11 C11 2.8(2) ? Pd O22 C22 C23 -179.0(2) ? Pd O22 C22 C21 1.9(3) ? Pd O11 C11 C17 177.3(2) ? Pd O11 C11 C12 -2.4(3) ? O11 C11 C17 C16 178.9(4) ? C12 C11 C17 C16 -1.4(6) ? Pd O12 C12 C13 -177.0(2) ? Pd O12 C12 C11 2.3(3) ? O11 C11 C12 O12 0.1(4) yes C17 C11 C12 O12 -179.6(3) ? O11 C11 C12 C13 179.3(3) ? C17 C11 C12 C13 -0.4(5) ? Pd O21 C21 C27 -178.6(2) ? Pd O21 C21 C22 1.8(3) ? C26 C27 C21 O21 -177.9(3) ? C26 C27 C21 C22 1.6(6) ? O21 C21 C22 O22 -2.6(4) yes C23 C22 C21 O21 178.4(3) ? O22 C22 C21 C27 177.9(3) ? C23 C22 C21 C27 -1.1(5) ? O22 C22 C23 C24 -179.2(3) ? C21 C22 C23 C24 -0.2(5) ? C13 C14 C15 C16 -1.5(7) yes C23 C24 C25 C26 0.5(6) yes C22 C23 C24 C25 0.5(6) ? C24 C25 C26 C27 -0.8(6) ? C21 C27 C26 C25 -0.4(6) ? C11 C17 C16 C15 0.4(7) ? C14 C15 C16 C17 1.8(7) ? C15 C14 C13 C12 -1.1(6) ? O12 C12 C13 C14 -178.5(3) ? C11 C12 C13 C14 2.3(5) ? loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 PubChem 139068269