#------------------------------------------------------------------------------ #$Date: 2011-09-17 21:27:16 +0100 (Sat, 17 Sep 2011) $ #$Revision: 26029 $ #$URL: svn://www.crystallography.net/cod/cif/2/2206690.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2206690 loop_ _publ_author_name 'K. Prabhakara Rao' 'K. Vidyasagar' _publ_section_title ; Sodium methylenediphosphonate, Na(HO~3~PCH~2~PO~3~H~2~) ; _journal_coeditor_code HB6235 _journal_issue 9 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first m1794 _journal_page_last m1796 _journal_volume 61 _journal_year 2005 _chemical_formula_iupac '[Na (C H5 O6 P2)]' _chemical_formula_moiety 'C H5 Na O6 P2' _chemical_formula_sum 'C H5 Na O6 P2' _chemical_formula_weight 197.98 _chemical_name_common 'Sodium methylenediphosphonate' _chemical_name_systematic ; poly[sodium(I)-\m~6~-methylenediphosphonato] ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 99.860(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.1041(14) _cell_length_b 8.139(3) _cell_length_c 9.7289(8) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 15 _cell_measurement_theta_min 10 _cell_volume 632.2(2) _computing_cell_refinement 'CAD-4 Software' _computing_data_collection 'CAD-4 Software (Enraf--Nonius, 1989)' _computing_data_reduction 'XCAD4 in WinGX (Farrugia, 1999)' _computing_molecular_graphics 'DIAMOND (Pennington, 1999) and ORTEP-3 (WinGX; Farrugia, 1999)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Enraf-Nonius CAD-4' _diffrn_measurement_method \w/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0174 _diffrn_reflns_av_sigmaI/netI 0.0090 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 0 _diffrn_reflns_limit_l_min -11 _diffrn_reflns_number 1180 _diffrn_reflns_theta_full 24.96 _diffrn_reflns_theta_max 24.96 _diffrn_reflns_theta_min 3.03 _diffrn_standards_decay_% 0 _diffrn_standards_interval_time 60 _diffrn_standards_number 2 _exptl_absorpt_coefficient_mu 0.725 _exptl_absorpt_correction_T_max 0.865 _exptl_absorpt_correction_T_min 0.716 _exptl_absorpt_correction_type psi-scan _exptl_absorpt_process_details 'North et al. (1968)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 2.080 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Block _exptl_crystal_F_000 400 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.372 _refine_diff_density_min -0.381 _refine_ls_extinction_coef 0.210(9) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997)' _refine_ls_goodness_of_fit_ref 1.243 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 105 _refine_ls_number_reflns 1112 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.243 _refine_ls_R_factor_all 0.0282 _refine_ls_R_factor_gt 0.0279 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0387P)^2^+0.6147P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0779 _refine_ls_wR_factor_ref 0.0781 _reflns_number_gt 1088 _reflns_number_total 1112 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file hb6235.cif _[local]_cod_cif_authors_sg_H-M 'P 21/n' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2206690 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol C -0.0117(3) 0.0787(3) 0.1929(2) 0.0169(5) Uani d . 1 C Na1 0.5000 0.0000 0.5000 0.0335(4) Uani d S 1 Na Na2 0.5000 0.0000 0.0000 0.0210(3) Uani d S 1 Na O1 0.2927(2) 0.1915(2) 0.31855(16) 0.0216(4) Uani d . 1 O H1 0.2666 0.2864 0.3334 0.067(13) Uiso calc R 1 H O2 0.1876(2) 0.2775(2) 0.06817(17) 0.0215(4) Uani d . 1 O H2 0.2503 0.2589 0.0123 0.032 Uiso calc R 1 H O3 0.28241(19) -0.01406(19) 0.12652(16) 0.0187(4) Uani d . 1 O O4 -0.1471(2) 0.38419(19) 0.16228(17) 0.0205(4) Uani d . 1 O O5 -0.1138(2) 0.2529(2) 0.40122(17) 0.0208(4) Uani d . 1 O O6 -0.33157(19) 0.1475(2) 0.20446(17) 0.0204(4) Uani d . 1 O H6 -0.3362 0.0652 0.2522 0.070(14) Uiso calc R 1 H P1 0.19787(7) 0.13547(7) 0.17328(6) 0.0136(2) Uani d . 1 P P2 -0.15439(6) 0.22778(7) 0.24346(5) 0.0137(2) Uani d . 1 P H1A 0.001(4) 0.002(4) 0.257(3) 0.035(9) Uiso d . 1 H H1B -0.064(3) 0.029(3) 0.108(3) 0.017(6) Uiso d . 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C 0.0173(11) 0.0140(11) 0.0215(12) -0.0001(9) 0.0091(9) -0.0029(10) Na1 0.0374(8) 0.0290(8) 0.0406(9) -0.0147(6) 0.0253(7) -0.0189(6) Na2 0.0184(6) 0.0234(7) 0.0231(7) 0.0065(5) 0.0089(5) 0.0052(5) O1 0.0243(9) 0.0180(9) 0.0219(9) 0.0005(7) 0.0022(7) -0.0025(6) O2 0.0257(9) 0.0194(9) 0.0237(9) 0.0079(7) 0.0161(7) 0.0071(7) O3 0.0224(8) 0.0135(8) 0.0230(8) 0.0037(6) 0.0118(7) 0.0011(6) O4 0.0256(9) 0.0148(8) 0.0236(8) 0.0006(6) 0.0117(7) 0.0024(6) O5 0.0230(9) 0.0239(9) 0.0174(8) -0.0068(7) 0.0091(7) -0.0050(6) O6 0.0163(8) 0.0203(9) 0.0251(9) -0.0034(6) 0.0051(7) 0.0000(7) P1 0.0156(3) 0.0115(3) 0.0152(3) 0.0020(2) 0.0069(2) 0.00050(19) P2 0.0143(3) 0.0127(3) 0.0156(4) -0.0011(2) 0.0070(2) -0.0016(2) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 ; International Tables for Crystallography (1992). Vol. C, Tables 4.2.6.8 and 6.1.1.4 ; H H 0.0000 0.0000 ; International Tables for Crystallography (1992). Vol. C, Tables 4.2.6.8 and 6.1.1.4 ; Na Na 0.0362 0.0249 ; International Tables for Crystallography (1992). Vol. C, Tables 4.2.6.8 and 6.1.1.4 ; O O 0.0106 0.0060 ; International Tables for Crystallography (1992). Vol. C, Tables 4.2.6.8 and 6.1.1.4 ; P P 0.1023 0.0942 ; International Tables for Crystallography (1992). Vol. C, Tables 4.2.6.8 and 6.1.1.4 ; loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle P1 C P2 . . 121.12(13) P1 C H1A . . 105(2) P2 C H1A . . 107(2) P1 C H1B . . 107.9(15) P2 C H1B . . 108.2(16) H1A C H1B . . 107(3) O4 Na1 O4 4_666 2_545 180.0 O4 Na1 O2 4_666 2_545 96.88(5) O4 Na1 O2 2_545 2_545 83.12(5) O4 Na1 O2 4_666 4_666 83.12(5) O4 Na1 O2 2_545 4_666 96.88(5) O2 Na1 O2 2_545 4_666 180.0 O4 Na1 O1 4_666 . 82.94(5) O4 Na1 O1 2_545 . 97.06(5) O2 Na1 O1 2_545 . 87.77(6) O2 Na1 O1 4_666 . 92.23(6) O4 Na1 O1 4_666 3_656 97.06(5) O4 Na1 O1 2_545 3_656 82.94(5) O2 Na1 O1 2_545 3_656 92.23(6) O2 Na1 O1 4_666 3_656 87.77(6) O1 Na1 O1 . 3_656 180.0 O3 Na2 O3 . 3_655 180.0 O3 Na2 O5 . 2_545 91.24(5) O3 Na2 O5 3_655 2_545 88.76(5) O3 Na2 O5 . 4_665 88.76(5) O3 Na2 O5 3_655 4_665 91.24(5) O5 Na2 O5 2_545 4_665 180.0 O3 Na2 O6 . 3 92.13(5) O3 Na2 O6 3_655 3 87.87(5) O5 Na2 O6 2_545 3 92.10(6) O5 Na2 O6 4_665 3 87.90(6) O3 Na2 O6 . 1_655 87.87(5) O3 Na2 O6 3_655 1_655 92.13(5) O5 Na2 O6 2_545 1_655 87.90(6) O5 Na2 O6 4_665 1_655 92.10(6) O6 Na2 O6 3 1_655 180.0 P1 O1 Na1 . . 125.26(9) P1 O1 H1 . . 109.5 Na1 O1 H1 . . 125.2 P1 O2 Na1 . 2 135.73(9) P1 O2 H2 . . 109.5 Na1 O2 H2 2 . 113.2 P1 O3 Na2 . . 123.19(9) P2 O4 Na1 . 2 140.12(9) P2 O5 Na2 . 2 121.84(9) P2 O6 Na2 . 1_455 137.93(9) P2 O6 H6 . . 109.5 Na2 O6 H6 1_455 . 89.2 O3 P1 O2 . . 112.52(9) O3 P1 O1 . . 109.36(9) O2 P1 O1 . . 110.25(10) O3 P1 C . . 108.11(10) O2 P1 C . . 108.59(10) O1 P1 C . . 107.87(10) O4 P2 O5 . . 113.17(10) O4 P2 O6 . . 110.06(9) O5 P2 O6 . . 109.29(9) O4 P2 C . . 109.98(10) O5 P2 C . . 109.07(10) O6 P2 C . . 104.94(10) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Na1 O4 4_666 2.3338(16) ? Na1 O4 2_545 2.3338(16) y Na1 O2 2_545 2.3843(16) y Na1 O2 4_666 2.3843(16) ? Na1 O1 . 2.7112(17) y Na1 O1 3_656 2.7112(17) ? Na2 O3 . 2.3197(15) y Na2 O3 3_655 2.3197(15) ? Na2 O5 2_545 2.3488(17) y Na2 O5 4_665 2.3488(17) ? Na2 O6 3 2.5162(16) y Na2 O6 1_655 2.5162(16) ? C P1 . 1.802(2) ? C P2 . 1.802(2) ? C H1A . 0.88(3) ? C H1B . 0.95(3) ? O1 H1 . 0.8200 ? O2 Na1 2 2.3843(16) ? O2 H2 . 0.8200 ? P1 O1 . 1.5570(16) y P1 O2 . 1.5360(16) y P1 O3 . 1.5047(16) y P2 O4 . 1.5046(17) y P2 O5 . 1.5273(17) y P2 O6 . 1.5640(16) y O4 Na1 2 2.3338(16) ? O5 Na2 2 2.3488(17) ? O6 Na2 1_455 2.5162(16) ? O6 H6 . 0.8200 ? P2 Na2 2 3.4108(7) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O1 H1 O3 2 0.82 1.73 2.552(2) 177 O2 H2 O5 4_665 0.82 1.67 2.487(2) 172 O6 H6 O4 2_445 0.82 1.71 2.526(2) 175 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion O4 Na1 O1 P1 4_666 -135.03(11) O4 Na1 O1 P1 2_545 44.97(11) O2 Na1 O1 P1 2_545 -37.82(10) O2 Na1 O1 P1 4_666 142.18(10) O5 Na2 O3 P1 2_545 149.97(11) O5 Na2 O3 P1 4_665 -30.03(11) O6 Na2 O3 P1 3 -117.88(11) O6 Na2 O3 P1 1_655 62.12(11) Na2 O3 P1 O2 . 34.06(14) Na2 O3 P1 O1 . -88.82(11) Na2 O3 P1 C . 153.97(11) Na1 O2 P1 O3 2 149.85(13) Na1 O2 P1 O1 2 -87.77(15) Na1 O2 P1 C 2 30.22(17) Na1 O1 P1 O3 . -20.21(13) Na1 O1 P1 O2 . -144.43(9) Na1 O1 P1 C . 97.14(12) P2 C P1 O3 . -178.34(13) P2 C P1 O2 . -55.98(17) P2 C P1 O1 . 63.50(17) Na1 O4 P2 O5 2 118.02(15) Na1 O4 P2 O6 2 -119.38(15) Na1 O4 P2 C 2 -4.24(19) Na2 O5 P2 O4 2 -11.53(14) Na2 O5 P2 O6 2 -134.56(10) Na2 O5 P2 C 2 111.24(11) Na2 O6 P2 O4 1_455 71.36(16) Na2 O6 P2 O5 1_455 -163.78(13) Na2 O6 P2 C 1_455 -46.93(16) P1 C P2 O4 . 44.72(18) P1 C P2 O5 . -79.94(16) P1 C P2 O6 . 163.06(14)