#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2206833.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2206833 loop_ _publ_author_name 'Bray, David J.' 'Clegg, Jack K.' 'Liao, Li-Ling' 'Lindoy, Leonard F.' 'McMurtrie, John C.' 'Schilter, David' 'Wei, Gang' 'Won, Tae-Jin' _publ_section_title ; (Ethane-1,2-diamine)dinitratopalladium(II) ; _journal_coeditor_code AC6192 _journal_issue 10 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first m1940 _journal_page_last m1942 _journal_volume 61 _journal_year 2005 _chemical_formula_moiety 'C2 H8 N4 O6 Pd' _chemical_formula_sum 'C2 H8 N4 O6 Pd' _chemical_formula_weight 290.52 _chemical_name_common '[Pd (N O3)2 (2 H8 N2)]' _chemical_name_systematic (Ethane-1,2-diamine)dinitratopalladium(II) _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90.00 _cell_angle_beta 109.8160(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 16.8478(6) _cell_length_b 7.7746(3) _cell_length_c 13.0702(5) _cell_measurement_reflns_used 10524 _cell_measurement_temperature 150(2) _cell_measurement_theta_max 28.303 _cell_measurement_theta_min 2.416 _cell_volume 1610.62(11) _computing_cell_refinement 'SAINT (Bruker, 1995)' _computing_data_collection 'SMART (Bruker, 1995)' _computing_data_reduction 'SAINT and XPREP (Bruker, 1995)' _computing_molecular_graphics 'ORTEP-3 (Farrugia, 1997) and WinGX-32 (Farrugia, 1999)' _computing_publication_material 'enCIFer (Allen et al., 2004)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SIR97 (Altomare et al., 1999)' _diffrn_ambient_temperature 150(2) _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.966 _diffrn_measurement_device_type 'Bruker SMART 1000 CCD area-detector' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0191 _diffrn_reflns_av_sigmaI/netI 0.0160 _diffrn_reflns_limit_h_max 22 _diffrn_reflns_limit_h_min -22 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 15349 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 28.30 _diffrn_reflns_theta_min 3.10 _diffrn_standards_decay_% 0.33 _diffrn_standards_interval_count 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 234 _exptl_absorpt_coefficient_mu 2.315 _exptl_absorpt_correction_T_max 0.690 _exptl_absorpt_correction_T_min 0.514 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1999)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 2.396 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 1136 _exptl_crystal_size_max 0.51 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.16 _refine_diff_density_max 1.076 _refine_diff_density_min -0.400 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.033 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 259 _refine_ls_number_reflns 3881 _refine_ls_number_restraints 8 _refine_ls_restrained_S_all 1.033 _refine_ls_R_factor_all 0.0183 _refine_ls_R_factor_gt 0.0162 _refine_ls_shift/su_max 0.002 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0236P)^2^+0.7251P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0419 _refine_ls_wR_factor_ref 0.0431 _reflns_number_gt 3554 _reflns_number_total 3881 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ac6192.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M P21/c _[local]_cod_cif_authors_sg_Hall -P2ybc _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 1610.62(10) _cod_database_code 2206833 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol C1 0.07726(11) 0.4163(2) 0.32175(15) 0.0241(4) Uani d . 1 . . C H2A 0.0679 0.5406 0.3055 0.029 Uiso calc R 1 A 1 H H2B 0.0375 0.3774 0.3580 0.029 Uiso calc R 1 A 1 H C2 0.06314(11) 0.3164(2) 0.21841(14) 0.0242(3) Uani d . 1 E . C H3A 0.0619 0.1916 0.2327 0.029 Uiso calc R 1 B 2 H H3B 0.0085 0.3493 0.1634 0.029 Uiso calc R 1 B 2 H C3 0.44537(11) 0.9163(2) 0.33465(15) 0.0219(4) Uani d . 1 . . C H6A 0.4990 0.8829 0.3915 0.026 Uiso calc R 1 C 1 H H6B 0.4496 1.0380 0.3148 0.026 Uiso calc R 1 C 1 H C4 0.42840(10) 0.8026(2) 0.23646(14) 0.0201(3) Uani d . 1 J . C H7A 0.4702 0.8251 0.2000 0.024 Uiso calc R 1 D 2 H H7B 0.4325 0.6800 0.2582 0.024 Uiso calc R 1 D 2 H N1 0.16543(9) 0.38548(19) 0.39314(12) 0.0183(3) Uani d D 1 E 1 N H1 0.1764(13) 0.454(3) 0.4501(15) 0.027 Uiso d D 1 F 1 H H2 0.1697(13) 0.280(2) 0.4141(17) 0.027 Uiso d D 1 G 1 H N2 0.13345(9) 0.35657(19) 0.17776(12) 0.0196(3) Uani d D 1 E 2 N H3 0.1183(14) 0.447(2) 0.1329(17) 0.029 Uiso d D 1 H 2 H H4 0.1420(13) 0.265(2) 0.1422(17) 0.029 Uiso d D 1 I 2 H N3 0.31257(9) 0.38063(18) 0.13002(12) 0.0193(3) Uani d . 1 . . N N4 0.40206(9) 0.39355(17) 0.47206(12) 0.0189(3) Uani d . 1 . . N N5 0.37339(10) 0.89330(19) 0.37507(12) 0.0194(3) Uani d D 1 J 1 N H5 0.3772(13) 0.969(3) 0.4257(16) 0.029 Uiso d D 1 K 1 H H6 0.3761(13) 0.791(2) 0.4044(17) 0.029 Uiso d D 1 L 1 H N6 0.34149(9) 0.84238(18) 0.16138(11) 0.0180(3) Uani d D 1 J 2 N H7 0.3219(12) 0.749(2) 0.1230(16) 0.027 Uiso d D 1 M 2 H H8 0.3493(14) 0.919(2) 0.1163(17) 0.027 Uiso d D 1 N 2 H N7 0.10544(9) 0.83412(18) 0.08766(11) 0.0199(3) Uani d . 1 . . N N8 0.18726(9) 0.92392(16) 0.41271(12) 0.0186(3) Uani d . 1 . . N O1 0.28288(8) 0.23489(15) 0.12090(11) 0.0277(3) Uani d . 1 . . O O2 0.34835(9) 0.44032(19) 0.06988(11) 0.0310(3) Uani d . 1 . . O O3 0.30658(8) 0.48244(15) 0.20513(10) 0.0236(3) Uani d . 1 E . O O4 0.33690(7) 0.49827(14) 0.43624(9) 0.0197(2) Uani d . 1 E . O O5 0.40964(8) 0.27554(15) 0.41420(11) 0.0260(3) Uani d . 1 . . O O6 0.45183(8) 0.42377(15) 0.56363(11) 0.0270(3) Uani d . 1 . . O O7 0.10879(8) 0.72811(16) 0.15929(11) 0.0274(3) Uani d . 1 . . O O8 0.04821(8) 0.84143(17) 0.00052(11) 0.0300(3) Uani d . 1 . . O O9 0.16642(7) 0.94747(15) 0.10590(10) 0.0196(2) Uani d . 1 J . O O10 0.21827(8) 0.78038(15) 0.43498(11) 0.0268(3) Uani d . 1 . . O O11 0.14757(8) 0.99788(17) 0.46451(10) 0.0286(3) Uani d . 1 . . O O12 0.19575(7) 1.00942(15) 0.33215(9) 0.0209(2) Uani d . 1 J . O Pd1 0.239096(8) 0.419159(14) 0.302404(10) 0.01465(4) Uani d . 1 . . Pd Pd2 0.266618(7) 0.911995(14) 0.246167(10) 0.01437(4) Uani d . 1 . . Pd loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 0.0195(8) 0.0318(9) 0.0225(9) 0.0015(6) 0.0091(7) -0.0010(7) C2 0.0182(8) 0.0308(9) 0.0219(8) -0.0041(7) 0.0048(7) -0.0008(7) C3 0.0166(8) 0.0205(8) 0.0276(9) -0.0012(6) 0.0062(7) -0.0034(6) C4 0.0183(8) 0.0187(7) 0.0238(8) 0.0018(6) 0.0080(7) -0.0003(6) N1 0.0208(7) 0.0199(6) 0.0151(7) -0.0003(5) 0.0072(6) -0.0006(5) N2 0.0231(7) 0.0202(7) 0.0152(6) -0.0023(6) 0.0059(6) -0.0023(5) N3 0.0178(7) 0.0232(7) 0.0174(7) 0.0038(5) 0.0066(6) 0.0037(5) N4 0.0183(7) 0.0180(6) 0.0209(7) -0.0011(5) 0.0074(6) -0.0013(5) N5 0.0211(7) 0.0199(7) 0.0164(7) 0.0010(5) 0.0053(6) -0.0019(5) N6 0.0215(7) 0.0169(7) 0.0166(6) 0.0007(5) 0.0079(6) 0.0012(5) N7 0.0187(7) 0.0207(7) 0.0209(7) 0.0025(5) 0.0075(6) -0.0013(5) N8 0.0196(7) 0.0197(7) 0.0163(7) -0.0032(5) 0.0059(6) -0.0010(5) O1 0.0347(7) 0.0199(6) 0.0305(7) -0.0016(5) 0.0137(6) -0.0052(5) O2 0.0287(7) 0.0449(8) 0.0258(7) 0.0027(6) 0.0174(6) 0.0089(6) O3 0.0315(7) 0.0203(6) 0.0252(6) -0.0074(5) 0.0177(5) -0.0049(5) O4 0.0174(5) 0.0187(5) 0.0206(6) 0.0016(4) 0.0033(5) -0.0043(4) O5 0.0310(7) 0.0203(6) 0.0286(7) 0.0035(5) 0.0125(6) -0.0060(5) O6 0.0240(7) 0.0294(7) 0.0223(6) 0.0010(5) 0.0008(5) -0.0024(5) O7 0.0306(7) 0.0239(6) 0.0277(7) -0.0027(5) 0.0097(6) 0.0063(5) O8 0.0239(7) 0.0352(7) 0.0239(6) 0.0011(5) -0.0011(5) -0.0016(6) O9 0.0180(6) 0.0219(5) 0.0183(6) -0.0011(5) 0.0055(5) 0.0039(5) O10 0.0335(7) 0.0197(6) 0.0281(6) 0.0026(5) 0.0116(6) 0.0069(5) O11 0.0320(7) 0.0343(7) 0.0263(6) -0.0002(6) 0.0186(6) -0.0047(6) O12 0.0272(6) 0.0196(6) 0.0196(6) 0.0043(5) 0.0129(5) 0.0036(5) Pd1 0.01615(7) 0.01443(7) 0.01398(7) -0.00212(4) 0.00591(5) -0.00176(4) Pd2 0.01580(7) 0.01446(7) 0.01336(7) 0.00110(4) 0.00559(5) 0.00127(4) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag N1 C1 C2 107.53(14) ? N1 C1 H2A 110.2 ? C2 C1 H2A 110.2 ? N1 C1 H2B 110.2 ? C2 C1 H2B 110.2 ? H2A C1 H2B 108.5 ? N2 C2 C1 108.04(14) ? N2 C2 H3A 110.1 ? C1 C2 H3A 110.1 ? N2 C2 H3B 110.1 ? C1 C2 H3B 110.1 ? H3A C2 H3B 108.4 ? N5 C3 C4 106.87(13) ? N5 C3 H6A 110.3 ? C4 C3 H6A 110.3 ? N5 C3 H6B 110.3 ? C4 C3 H6B 110.3 ? H6A C3 H6B 108.6 ? N6 C4 C3 107.43(13) ? N6 C4 H7A 110.2 ? C3 C4 H7A 110.2 ? N6 C4 H7B 110.2 ? C3 C4 H7B 110.2 ? H7A C4 H7B 108.5 ? C1 N1 Pd1 107.22(11) ? C1 N1 H1 108.2(14) ? Pd1 N1 H1 115.3(14) ? C1 N1 H2 108.2(14) ? Pd1 N1 H2 108.1(14) ? H1 N1 H2 110(2) ? C2 N2 Pd1 110.66(10) ? C2 N2 H3 108.3(14) ? Pd1 N2 H3 108.4(14) ? C2 N2 H4 108.0(14) ? Pd1 N2 H4 111.1(14) ? H3 N2 H4 110(2) ? O1 N3 O2 123.85(15) ? O1 N3 O3 120.34(14) ? O2 N3 O3 115.81(14) ? O5 N4 O6 124.46(15) ? O5 N4 O4 119.51(14) ? O6 N4 O4 116.04(13) ? C3 N5 Pd2 107.40(11) ? C3 N5 H5 109.1(14) ? Pd2 N5 H5 113.7(14) ? C3 N5 H6 109.7(14) ? Pd2 N5 H6 109.3(14) ? H5 N5 H6 108(2) ? C4 N6 Pd2 110.58(10) ? C4 N6 H7 107.4(14) ? Pd2 N6 H7 110.6(14) ? C4 N6 H8 104.2(14) ? Pd2 N6 H8 116.6(14) ? H7 N6 H8 106.9(19) ? O8 N7 O7 123.94(15) ? O8 N7 O9 117.45(14) ? O7 N7 O9 118.61(14) ? O10 N8 O11 123.87(15) ? O10 N8 O12 120.38(14) ? O11 N8 O12 115.74(13) ? N3 O3 Pd1 122.12(10) ? N4 O4 Pd1 116.72(9) ? N7 O9 Pd2 115.43(9) ? N8 O12 Pd2 120.26(10) ? N1 Pd1 N2 83.84(6) yes N1 Pd1 O3 172.80(6) yes N2 Pd1 O3 94.62(5) yes N1 Pd1 O4 90.81(5) yes N2 Pd1 O4 173.19(5) yes O3 Pd1 O4 90.16(5) yes N5 Pd2 N6 83.82(6) yes N5 Pd2 O12 95.14(5) yes N6 Pd2 O12 173.68(5) yes N5 Pd2 O9 173.01(5) yes N6 Pd2 O9 91.35(5) yes O12 Pd2 O9 89.11(5) yes loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag C1 N1 1.482(2) ? C1 C2 1.505(2) ? C1 H2A 0.9900 ? C1 H2B 0.9900 ? C2 N2 1.486(2) ? C2 H3A 0.9900 ? C2 H3B 0.9900 ? C3 N5 1.489(2) ? C3 C4 1.504(2) ? C3 H6A 0.9900 ? C3 H6B 0.9900 ? C4 N6 1.493(2) ? C4 H7A 0.9900 ? C4 H7B 0.9900 ? N1 Pd1 2.0032(14) yes N1 H1 0.882(15) ? N1 H2 0.863(15) ? N2 Pd1 2.0231(14) yes N2 H3 0.897(15) ? N2 H4 0.886(15) ? N3 O1 1.2279(19) ? N3 O2 1.2319(19) ? N3 O3 1.2914(19) ? N4 O5 1.2230(18) ? N4 O6 1.2289(19) ? N4 O4 1.3185(17) ? N5 Pd2 2.0102(15) yes N5 H5 0.873(15) ? N5 H6 0.875(15) ? N6 Pd2 2.0150(14) yes N6 H7 0.880(15) ? N6 H8 0.881(15) ? N7 O8 1.2189(19) ? N7 O7 1.2341(19) ? N7 O9 1.3126(18) ? N8 O10 1.2248(18) ? N8 O11 1.2422(19) ? N8 O12 1.2935(18) ? O3 Pd1 2.0326(12) yes O4 Pd1 2.0492(11) yes O9 Pd2 2.0465(12) yes O12 Pd2 2.0426(11) yes loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N2 H3 O7 . 0.897(15) 2.225(19) 2.9167(19) 133.6(19) N2 H3 O11 4_575 0.897(15) 2.45(2) 3.0911(19) 128.7(18) N2 H4 O1 . 0.886(15) 2.49(2) 3.009(2) 117.7(16) N2 H4 O9 1_545 0.886(15) 2.576(17) 3.415(2) 158.3(19) N5 H6 O4 . 0.875(15) 2.446(16) 3.2837(19) 160.3(19) N5 H6 O4 . 0.875(15) 2.446(16) 3.2837(19) 160.3(19) N1 H2 O11 1_545 0.863(15) 2.353(16) 3.199(2) 166.6(18) N1 H2 O12 1_545 0.863(15) 2.463(19) 3.1177(19) 133.1(18) N1 H1 O9 4_576 0.882(15) 2.235(17) 3.0642(18) 156.6(19) N6 H7 O3 . 0.880(15) 2.39(2) 2.9550(18) 122.3(17) N6 H7 O10 4_575 0.880(15) 2.496(19) 3.1324(19) 129.8(17) N6 H7 O2 . 0.880(15) 2.580(17) 3.363(2) 148.8(17) N6 H8 O4 4_575 0.881(15) 2.378(18) 3.1695(18) 149.5(19) N6 H8 O6 4_575 0.881(15) 2.398(18) 3.1628(19) 145.4(19) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion N1 C1 C2 N2 -49.86(18) N5 C3 C4 N6 51.84(17) C2 C1 N1 Pd1 47.81(15) C1 C2 N2 Pd1 28.20(17) C4 C3 N5 Pd2 -47.52(14) C3 C4 N6 Pd2 -31.80(15) O1 N3 O3 Pd1 -6.0(2) O2 N3 O3 Pd1 173.27(11) O5 N4 O4 Pd1 14.64(18) O6 N4 O4 Pd1 -165.53(11) O8 N7 O9 Pd2 -173.58(11) O7 N7 O9 Pd2 7.03(17) O10 N8 O12 Pd2 -3.5(2) O11 N8 O12 Pd2 175.60(11) C1 N1 Pd1 N2 -25.52(11) C1 N1 Pd1 O4 150.26(11) C2 N2 Pd1 N1 -1.67(12) C2 N2 Pd1 O3 -174.61(11) N3 O3 Pd1 N2 -51.27(13) N3 O3 Pd1 O4 133.58(12) N4 O4 Pd1 N1 110.37(11) N4 O4 Pd1 O3 -76.76(11) C3 N5 Pd2 N6 23.81(10) C3 N5 Pd2 O12 -149.92(10) C4 N6 Pd2 N5 4.60(10) C4 N6 Pd2 O9 179.53(10) N8 O12 Pd2 N5 -58.45(12) N8 O12 Pd2 O9 127.11(12) N7 O9 Pd2 N6 109.89(11) N7 O9 Pd2 O12 -76.42(10)