#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2206854.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2206854 loop_ _publ_author_name 'Miao, Qian' 'Hu, Mao-Lin' _publ_section_title ; Tetraaquabis(uracil-1-acetato)cadmium(II) ; _journal_coeditor_code BH6032 _journal_issue 10 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first m2083 _journal_page_last m2085 _journal_volume 61 _journal_year 2005 _chemical_formula_iupac '[Cd (C6 H5 N2 O4)2 (H2 O)4]' _chemical_formula_moiety 'C12 H18 Cd N4 O12' _chemical_formula_sum 'C12 H18 Cd N4 O12' _chemical_formula_weight 522.70 _chemical_name_systematic ; Tetraaquabis(uracil-1-acetato)cadmium(II) ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 98.4520(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 12.6956(9) _cell_length_b 5.1295(4) _cell_length_c 13.9659(10) _cell_measurement_reflns_used 3064 _cell_measurement_temperature 298(2) _cell_measurement_theta_max 25.18 _cell_measurement_theta_min 2.95 _cell_volume 899.61(11) _computing_cell_refinement 'SAINT (Bruker, 2002)' _computing_data_collection 'SMART (Bruker, 2002)' _computing_data_reduction SAINT _computing_molecular_graphics 'SHELXTL (Bruker, 2002)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 298(2) _diffrn_measured_fraction_theta_full 0.993 _diffrn_measured_fraction_theta_max 0.993 _diffrn_measurement_device_type 'Bruker APEX area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0186 _diffrn_reflns_av_sigmaI/netI 0.0211 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -15 _diffrn_reflns_limit_k_max 6 _diffrn_reflns_limit_k_min -6 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_limit_l_min -16 _diffrn_reflns_number 4458 _diffrn_reflns_theta_full 25.20 _diffrn_reflns_theta_max 25.20 _diffrn_reflns_theta_min 1.62 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 1.289 _exptl_absorpt_correction_T_max 0.8107 _exptl_absorpt_correction_T_min 0.6333 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Bruker, 2002)' _exptl_crystal_colour Colourless _exptl_crystal_density_diffrn 1.930 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Block _exptl_crystal_F_000 524 _exptl_crystal_size_max 0.39 _exptl_crystal_size_mid 0.22 _exptl_crystal_size_min 0.17 _refine_diff_density_max 0.222 _refine_diff_density_min -0.315 _refine_ls_extinction_coef 0.0177(10) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997)' _refine_ls_goodness_of_fit_ref 1.058 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 146 _refine_ls_number_reflns 1611 _refine_ls_number_restraints 6 _refine_ls_restrained_S_all 1.057 _refine_ls_R_factor_all 0.0238 _refine_ls_R_factor_gt 0.0223 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0226P)^2^+0.8089P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0529 _refine_ls_wR_factor_ref 0.0537 _reflns_number_gt 1549 _reflns_number_total 1611 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bh6032.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/c' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2206854 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol Cd1 0.0000 0.0000 0.5000 0.02989(12) Uani d S 1 Cd O1 0.08664(13) 0.2781(3) 0.61021(12) 0.0370(4) Uani d . 1 O O2 0.24887(13) 0.1051(4) 0.64897(13) 0.0415(4) Uani d . 1 O O3 0.22971(12) 0.0856(3) 0.87294(13) 0.0352(4) Uani d . 1 O O4 0.58199(12) 0.2407(3) 0.95463(12) 0.0379(4) Uani d . 1 O O5 -0.01909(13) -0.2805(3) 0.62057(13) 0.0368(4) Uani d D 1 O H5A 0.0153(17) -0.414(4) 0.616(2) 0.044 Uiso d D 1 H H5B -0.0823(13) -0.302(5) 0.621(2) 0.044 Uiso d D 1 H O6 -0.16820(14) 0.1565(4) 0.51638(14) 0.0455(5) Uani d D 1 O H6A -0.190(2) 0.283(5) 0.5438(18) 0.055 Uiso d D 1 H H6B -0.202(2) 0.119(6) 0.4643(15) 0.055 Uiso d D 1 H N1 0.29996(14) 0.4318(4) 0.80170(13) 0.0246(4) Uani d . 1 N N2 0.40475(14) 0.1761(4) 0.91398(13) 0.0269(4) Uani d . 1 N H2 0.4097 0.0488 0.9544 0.032 Uiso calc R 1 H C1 0.17880(18) 0.2643(4) 0.65964(16) 0.0276(5) Uani d . 1 C C2 0.19909(18) 0.4742(4) 0.73754(17) 0.0270(5) Uani d . 1 C H2A 0.2006 0.6435 0.7069 0.032 Uiso calc R 1 H H2B 0.1411 0.4743 0.7757 0.032 Uiso calc R 1 H C3 0.30629(17) 0.2237(4) 0.86361(15) 0.0255(5) Uani d . 1 C C4 0.49735(17) 0.3110(4) 0.90686(15) 0.0266(5) Uani d . 1 C C5 0.48459(19) 0.5278(4) 0.84137(17) 0.0279(5) Uani d . 1 C H5 0.5425 0.6324 0.8333 0.034 Uiso calc R 1 H C6 0.38804(18) 0.5776(4) 0.79194(16) 0.0262(5) Uani d . 1 C H6 0.3805 0.7174 0.7491 0.031 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cd1 0.02480(16) 0.02813(17) 0.03517(17) 0.00194(9) -0.00075(10) -0.00477(10) O1 0.0292(9) 0.0315(9) 0.0461(10) 0.0047(7) -0.0085(7) -0.0106(8) O2 0.0315(9) 0.0444(10) 0.0459(10) 0.0127(8) -0.0035(8) -0.0146(9) O3 0.0213(8) 0.0355(9) 0.0480(10) -0.0053(7) 0.0020(7) 0.0119(8) O4 0.0233(8) 0.0454(10) 0.0424(9) -0.0041(7) -0.0034(7) 0.0162(8) O5 0.0266(9) 0.0348(10) 0.0490(10) 0.0062(8) 0.0058(8) 0.0013(8) O6 0.0308(10) 0.0504(12) 0.0527(12) 0.0117(8) -0.0032(8) -0.0229(9) N1 0.0230(10) 0.0235(9) 0.0262(9) 0.0006(8) 0.0003(7) 0.0019(8) N2 0.0243(9) 0.0261(10) 0.0295(9) -0.0016(8) 0.0010(7) 0.0084(8) C1 0.0263(11) 0.0255(11) 0.0299(11) 0.0001(9) 0.0001(9) 0.0021(9) C2 0.0247(12) 0.0257(12) 0.0290(12) 0.0033(9) -0.0017(9) 0.0013(9) C3 0.0244(11) 0.0251(11) 0.0268(11) 0.0006(9) 0.0029(9) -0.0001(9) C4 0.0247(11) 0.0291(12) 0.0261(11) -0.0028(9) 0.0038(9) -0.0010(9) C5 0.0274(12) 0.0278(12) 0.0288(12) -0.0060(9) 0.0051(9) 0.0026(9) C6 0.0306(12) 0.0230(11) 0.0254(11) -0.0005(9) 0.0055(9) 0.0015(9) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cd Cd -0.8075 1.2024 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O5 Cd1 O5 3_556 . 180.0 yes O5 Cd1 O1 3_556 . 90.62(6) yes O5 Cd1 O1 . . 89.38(6) yes O5 Cd1 O1 3_556 3_556 89.38(6) no O5 Cd1 O1 . 3_556 90.62(6) no O1 Cd1 O1 . 3_556 180.0 no O5 Cd1 O6 3_556 3_556 86.89(7) yes O5 Cd1 O6 . 3_556 93.11(7) yes O1 Cd1 O6 . 3_556 85.58(6) yes O1 Cd1 O6 3_556 3_556 94.42(6) no O5 Cd1 O6 3_556 . 93.11(7) no O5 Cd1 O6 . . 86.89(7) no O1 Cd1 O6 . . 94.42(6) yes O1 Cd1 O6 3_556 . 85.58(6) no O6 Cd1 O6 3_556 . 180.0 yes C1 O1 Cd1 . . 130.67(15) no Cd1 O5 H5A . . 111(2) no Cd1 O5 H5B . . 108(2) no H5A O5 H5B . . 115(2) no Cd1 O6 H6A . . 134(2) no Cd1 O6 H6B . . 102(2) no H6A O6 H6B . . 115(2) no C3 N1 C6 . . 121.07(18) no C3 N1 C2 . . 117.79(18) no C6 N1 C2 . . 120.72(18) no C3 N2 C4 . . 126.81(19) no C3 N2 H2 . . 116.6 no C4 N2 H2 . . 116.6 no O2 C1 O1 . . 126.5(2) no O2 C1 C2 . . 120.3(2) no O1 C1 C2 . . 113.19(19) no N1 C2 C1 . . 111.82(18) no N1 C2 H2A . . 109.3 no C1 C2 H2A . . 109.3 no N1 C2 H2B . . 109.3 no C1 C2 H2B . . 109.3 no H2A C2 H2B . . 107.9 no O3 C3 N2 . . 121.6(2) no O3 C3 N1 . . 122.98(19) no N2 C3 N1 . . 115.46(19) no O4 C4 N2 . . 119.9(2) no O4 C4 C5 . . 125.5(2) no N2 C4 C5 . . 114.65(19) no C6 C5 C4 . . 119.0(2) no C6 C5 H5 . . 120.5 no C4 C5 H5 . . 120.5 no C5 C6 N1 . . 122.9(2) no C5 C6 H6 . . 118.5 no N1 C6 H6 . . 118.5 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Cd1 O5 3_556 2.2549(18) no Cd1 O5 . 2.2549(18) yes Cd1 O1 . 2.2619(15) yes Cd1 O1 3_556 2.2619(15) no Cd1 O6 3_556 2.3240(17) no Cd1 O6 . 2.3240(17) yes O1 C1 . 1.270(3) yes O2 C1 . 1.233(3) yes O3 C3 . 1.225(3) yes O4 C4 . 1.233(3) yes O5 H5A . 0.822(16) no O5 H5B . 0.811(16) no O6 H6A . 0.823(16) no O6 H6B . 0.813(16) no N1 C3 . 1.368(3) yes N1 C6 . 1.369(3) yes N1 C2 . 1.467(3) yes N2 C3 . 1.363(3) yes N2 C4 . 1.380(3) yes N2 H2 . 0.8600 no C1 C2 . 1.525(3) yes C2 H2A . 0.9700 no C2 H2B . 0.9700 no C4 C5 . 1.434(3) yes C5 C6 . 1.340(3) yes C5 H5 . 0.9300 no C6 H6 . 0.9300 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O5 H5A O1 1_545 0.822(16) 1.826(17) 2.647(2) 177(3) yes O5 H5B O3 2_546 0.811(16) 1.972(17) 2.775(2) 171(3) yes O6 H6A O3 2_556 0.823(16) 2.046(16) 2.863(2) 172(3) yes O6 H6B O2 3_556 0.813(16) 1.975(17) 2.736(2) 156(3) yes N2 H2 O4 3_657 0.86 1.95 2.806(2) 179 yes