#------------------------------------------------------------------------------ #$Date: 2010-01-30 13:59:17 +0000 (Sat, 30 Jan 2010) $ #$Revision: 966 $ #$URL: svn://www.crystallography.net/cod/cif/2/2206979.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2206979 _space_group_IT_number 14 _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _[local]_cod_cif_authors_sg_H-M 'P 21/c' loop_ _publ_author_name 'Zhu, Mu-Lan' 'Guo, Ming-Lin' _publ_section_title ; 4-Methylpiperazin-1-ium 2-amino-5-iodobenzoate ; _journal_coeditor_code HG6245 _journal_issue 10 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o3310 _journal_page_last o3311 _journal_volume 61 _journal_year 2005 _chemical_formula_iupac 'C5 H13 N2 +, C7 H5 I N O2 -' _chemical_formula_moiety 'C5 H13 N2 +, C7 H5 I N O2 -' _chemical_formula_sum 'C12 H18 I N3 O2' _chemical_formula_weight 363.19 _chemical_name_systematic ; 4-Methylpiperazin-1-ium 2-amino-5-iodobenzoate ; _symmetry_cell_setting monoclinic _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 95.313(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 14.829(3) _cell_length_b 7.3472(14) _cell_length_c 13.713(3) _cell_measurement_reflns_used 2209 _cell_measurement_temperature 294(2) _cell_measurement_theta_max 24.06 _cell_measurement_theta_min 2.76 _cell_volume 1487.6(5) _computing_cell_refinement 'SAINT (Bruker, 1997)' _computing_data_collection 'SMART (Bruker, 1997)' _computing_data_reduction SAINT _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement SHELXTL _computing_structure_solution 'SHELXTL (Bruker, 2000)' _diffrn_ambient_temperature 294(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Bruker SMART CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0289 _diffrn_reflns_av_sigmaI/netI 0.0339 _diffrn_reflns_limit_h_max 17 _diffrn_reflns_limit_h_min -17 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min -8 _diffrn_reflns_limit_l_max 13 _diffrn_reflns_limit_l_min -16 _diffrn_reflns_number 7380 _diffrn_reflns_theta_full 25.10 _diffrn_reflns_theta_max 25.10 _diffrn_reflns_theta_min 1.38 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 2.152 _exptl_absorpt_correction_T_max 0.656 _exptl_absorpt_correction_T_min 0.578 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1996)' _exptl_crystal_colour Colorless _exptl_crystal_density_diffrn 1.622 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Prism _exptl_crystal_F_000 720 _exptl_crystal_size_max 0.26 _exptl_crystal_size_mid 0.22 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.326 _refine_diff_density_min -0.654 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.020 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 164 _refine_ls_number_reflns 2655 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.020 _refine_ls_R_factor_all 0.0660 _refine_ls_R_factor_gt 0.0322 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.039P)^2^+0.5464P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0721 _refine_ls_wR_factor_ref 0.0880 _reflns_number_gt 1678 _reflns_number_total 2655 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file hg6245.cif loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' I I -0.4742 1.8119 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol I1 0.014263(19) 0.86525(5) 0.85945(3) 0.08959(18) Uani d . 1 I N1 0.3687(2) 0.7581(5) 0.6555(2) 0.0729(10) Uani d . 1 N H1A 0.3651 0.7455 0.5929 0.087 Uiso calc R 1 H H1B 0.4207 0.7536 0.6890 0.087 Uiso calc R 1 H O1 0.38083(18) 0.8577(3) 0.95581(17) 0.0581(7) Uani d . 1 O O2 0.45410(19) 0.7625(6) 0.8329(2) 0.0887(10) Uani d . 1 O C1 0.2932(3) 0.7848(5) 0.7010(3) 0.0479(9) Uani d . 1 C C2 0.2963(2) 0.8082(4) 0.8032(2) 0.0389(8) Uani d . 1 C C3 0.2153(3) 0.8327(5) 0.8445(3) 0.0479(9) Uani d . 1 C H3 0.2170 0.8480 0.9120 0.057 Uiso calc R 1 H C4 0.1334(3) 0.8355(5) 0.7907(3) 0.0515(10) Uani d . 1 C C5 0.1304(3) 0.8171(5) 0.6901(3) 0.0642(11) Uani d . 1 C H5 0.0752 0.8217 0.6521 0.077 Uiso calc R 1 H C6 0.2086(3) 0.7922(6) 0.6470(3) 0.0615(11) Uani d . 1 C H6 0.2056 0.7797 0.5793 0.074 Uiso calc R 1 H C7 0.3828(3) 0.8099(5) 0.8681(3) 0.0497(9) Uani d . 1 C N2 0.3973(2) 0.1996(4) 1.0425(2) 0.0574(8) Uani d . 1 N H2A 0.4512 0.2047 1.0782 0.069 Uiso calc R 1 H H2B 0.3901 0.0862 1.0182 0.069 Uiso calc R 1 H N3 0.2346(2) 0.3752(5) 0.9684(3) 0.0742(11) Uani d . 1 N C8 0.3961(3) 0.3304(6) 0.9613(3) 0.0670(11) Uani d . 1 C H8A 0.4415 0.2970 0.9180 0.080 Uiso calc R 1 H H8B 0.4103 0.4512 0.9868 0.080 Uiso calc R 1 H C9 0.3035(4) 0.3308(6) 0.9052(3) 0.0747(13) Uani d . 1 C H9A 0.3023 0.4190 0.8525 0.090 Uiso calc R 1 H H9B 0.2912 0.2117 0.8765 0.090 Uiso calc R 1 H C10 0.2346(3) 0.2444(7) 1.0477(4) 0.0780(13) Uani d . 1 C H10A 0.2201 0.1246 1.0209 0.094 Uiso calc R 1 H H10B 0.1884 0.2774 1.0901 0.094 Uiso calc R 1 H C11 0.3247(3) 0.2387(6) 1.1060(3) 0.0669(11) Uani d . 1 C H11A 0.3363 0.3548 1.1384 0.080 Uiso calc R 1 H H11B 0.3241 0.1454 1.1560 0.080 Uiso calc R 1 H C12 0.1445(4) 0.3812(7) 0.9143(6) 0.130(3) Uani d . 1 C H12A 0.1252 0.2598 0.8971 0.195 Uiso calc R 1 H H12B 0.1471 0.4522 0.8558 0.195 Uiso calc R 1 H H12C 0.1023 0.4357 0.9546 0.195 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 I1 0.0505(2) 0.0945(3) 0.1271(3) 0.00456(17) 0.02630(18) -0.0012(2) N1 0.069(2) 0.112(3) 0.0385(19) 0.004(2) 0.0117(17) -0.0143(19) O1 0.0651(17) 0.0755(18) 0.0328(15) -0.0052(14) -0.0008(12) -0.0003(13) O2 0.0454(17) 0.165(3) 0.0541(18) 0.0159(19) -0.0017(14) -0.0237(19) C1 0.059(3) 0.047(2) 0.038(2) -0.0048(18) 0.0082(19) -0.0024(17) C2 0.044(2) 0.0400(19) 0.032(2) -0.0020(15) 0.0014(15) 0.0016(15) C3 0.057(2) 0.048(2) 0.040(2) -0.0029(17) 0.0093(18) 0.0008(16) C4 0.043(2) 0.049(2) 0.062(3) -0.0047(17) 0.0048(18) 0.0032(19) C5 0.054(3) 0.068(3) 0.067(3) -0.002(2) -0.013(2) 0.004(2) C6 0.067(3) 0.076(3) 0.038(2) -0.007(2) -0.010(2) -0.0037(19) C7 0.049(2) 0.057(2) 0.043(2) -0.0018(18) 0.0027(18) 0.0030(18) N2 0.0411(18) 0.065(2) 0.065(2) 0.0076(15) -0.0011(15) -0.0071(17) N3 0.047(2) 0.058(2) 0.114(3) 0.0006(17) -0.013(2) 0.008(2) C8 0.058(3) 0.075(3) 0.070(3) -0.005(2) 0.012(2) 0.004(2) C9 0.092(4) 0.058(3) 0.069(3) -0.008(2) -0.018(3) 0.009(2) C10 0.048(3) 0.069(3) 0.119(4) 0.003(2) 0.017(3) -0.002(3) C11 0.067(3) 0.071(3) 0.066(3) 0.011(2) 0.021(2) -0.004(2) C12 0.070(4) 0.072(3) 0.233(7) 0.003(3) -0.065(4) 0.027(4) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance I1 C4 2.090(4) N1 C1 1.346(5) N1 H1A 0.8600 N1 H1B 0.8600 O1 C7 1.257(4) O2 C7 1.251(4) C1 C6 1.397(5) C1 C2 1.409(5) C2 C3 1.386(5) C2 C7 1.493(5) C3 C4 1.362(5) C3 H3 0.9300 C4 C5 1.382(6) C5 C6 1.362(6) C5 H5 0.9300 C6 H6 0.9300 N2 C8 1.470(5) N2 C11 1.474(5) N2 H2A 0.9000 N2 H2B 0.9000 N3 C9 1.436(6) N3 C10 1.451(6) N3 C12 1.468(6) C8 C9 1.511(6) C8 H8A 0.9700 C8 H8B 0.9700 C9 H9A 0.9700 C9 H9B 0.9700 C10 C11 1.492(6) C10 H10A 0.9700 C10 H10B 0.9700 C11 H11A 0.9700 C11 H11B 0.9700 C12 H12A 0.9600 C12 H12B 0.9600 C12 H12C 0.9600 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C1 N1 H1A 120.0 C1 N1 H1B 120.0 H1A N1 H1B 120.0 N1 C1 C6 120.3(3) N1 C1 C2 121.8(3) C6 C1 C2 117.8(4) C3 C2 C1 118.3(3) C3 C2 C7 119.0(3) C1 C2 C7 122.7(3) C4 C3 C2 122.9(3) C4 C3 H3 118.6 C2 C3 H3 118.6 C3 C4 C5 119.0(4) C3 C4 I1 120.4(3) C5 C4 I1 120.7(3) C6 C5 C4 119.8(4) C6 C5 H5 120.1 C4 C5 H5 120.1 C5 C6 C1 122.2(4) C5 C6 H6 118.9 C1 C6 H6 118.9 O2 C7 O1 122.8(3) O2 C7 C2 118.6(3) O1 C7 C2 118.5(3) C8 N2 C11 111.2(3) C8 N2 H2A 109.4 C11 N2 H2A 109.4 C8 N2 H2B 109.4 C11 N2 H2B 109.4 H2A N2 H2B 108.0 C9 N3 C10 110.5(3) C9 N3 C12 111.6(5) C10 N3 C12 109.6(4) N2 C8 C9 109.4(3) N2 C8 H8A 109.8 C9 C8 H8A 109.8 N2 C8 H8B 109.8 C9 C8 H8B 109.8 H8A C8 H8B 108.2 N3 C9 C8 110.9(4) N3 C9 H9A 109.5 C8 C9 H9A 109.5 N3 C9 H9B 109.5 C8 C9 H9B 109.5 H9A C9 H9B 108.0 N3 C10 C11 111.0(4) N3 C10 H10A 109.4 C11 C10 H10A 109.4 N3 C10 H10B 109.4 C11 C10 H10B 109.4 H10A C10 H10B 108.0 N2 C11 C10 110.8(3) N2 C11 H11A 109.5 C10 C11 H11A 109.5 N2 C11 H11B 109.5 C10 C11 H11B 109.5 H11A C11 H11B 108.1 N3 C12 H12A 109.5 N3 C12 H12B 109.5 H12A C12 H12B 109.5 N3 C12 H12C 109.5 H12A C12 H12C 109.5 H12B C12 H12C 109.5 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion N1 C1 C2 C3 -179.2(3) C6 C1 C2 C3 1.6(5) N1 C1 C2 C7 1.5(5) C6 C1 C2 C7 -177.7(3) C1 C2 C3 C4 -0.1(5) C7 C2 C3 C4 179.1(3) C2 C3 C4 C5 -1.5(5) C2 C3 C4 I1 178.1(3) C3 C4 C5 C6 1.6(6) I1 C4 C5 C6 -178.0(3) C4 C5 C6 C1 -0.2(6) N1 C1 C6 C5 179.3(4) C2 C1 C6 C5 -1.4(6) C3 C2 C7 O2 170.0(4) C1 C2 C7 O2 -10.7(5) C3 C2 C7 O1 -9.5(5) C1 C2 C7 O1 169.8(3) C11 N2 C8 C9 -55.4(4) C10 N3 C9 C8 -59.4(5) C12 N3 C9 C8 178.4(3) N2 C8 C9 N3 57.9(5) C9 N3 C10 C11 58.3(5) C12 N3 C10 C11 -178.4(4) C8 N2 C11 C10 55.0(5) N3 C10 C11 N2 -55.7(5) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H1A O1 4_575 0.86 2.06 2.889(4) 162 N1 H1B O2 . 0.86 1.99 2.637(4) 131 N2 H2B O1 1_545 0.90 1.88 2.780(4) 174 N2 H2A O2 3_667 0.90 1.79 2.675(4) 168 _cod_database_code 2206979