#------------------------------------------------------------------------------ #$Date: 2016-02-20 16:35:30 +0000 (Sat, 20 Feb 2016) $ #$Revision: 176787 $ #$URL: svn://www.crystallography.net/cod/cif/2/21/44/2214442.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2214442 loop_ _publ_author_name 'Dong Han' 'Lin-Na Wang' 'Wen-He Zhong' 'Xiang-Bao Meng' 'Zhong-Jun Li' _publ_section_title ; Methyl 5-O-triphenylmethyl-\a-D-arabinofuranoside ; _journal_coeditor_code XU2257 _journal_issue 7 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o3168 _journal_page_last o3168 _journal_paper_doi 10.1107/S1600536807027110 _journal_volume 63 _journal_year 2007 _chemical_formula_iupac 'C25 H26 O5' _chemical_formula_moiety 'C25 H26 O5' _chemical_formula_sum 'C25 H26 O5' _chemical_formula_weight 406.46 _chemical_name_systematic ; Methyl 5-O-triphenylmethyl-\a-D-arabinofuranoside ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 7.4286(15) _cell_length_b 8.1298(16) _cell_length_c 34.101(7) _cell_measurement_reflns_used 6994 _cell_measurement_temperature 295(2) _cell_measurement_theta_max 25.03 _cell_measurement_theta_min 2.39 _cell_volume 2059.5(7) _computing_cell_refinement 'SCALE (Otwinowski & Minor, 1997)' _computing_data_collection 'DENZO (Otwinowski & Minor, 1997)' _computing_data_reduction SCALE _computing_molecular_graphics 'ORTEP-3 for Windows (Farrugia, 1997)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 295(2) _diffrn_detector_area_resol_mean 10 _diffrn_measured_fraction_theta_full 0.990 _diffrn_measured_fraction_theta_max 0.990 _diffrn_measurement_device_type 'Rigaku R-AXIS RAPID IP' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0425 _diffrn_reflns_av_sigmaI/netI 0.0512 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 40 _diffrn_reflns_limit_l_min -40 _diffrn_reflns_number 6994 _diffrn_reflns_theta_full 25.03 _diffrn_reflns_theta_max 25.03 _diffrn_reflns_theta_min 2.39 _diffrn_standards_interval_count 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.091 _exptl_absorpt_correction_T_max 0.992 _exptl_absorpt_correction_T_min 0.946 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(ABSCOR; Higashi, 1995)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.311 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 864 _exptl_crystal_size_max 0.50 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.18 _refine_diff_density_max 0.147 _refine_diff_density_min -0.158 _refine_ls_extinction_coef 0.0260(15) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL97 _refine_ls_goodness_of_fit_ref 1.012 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 281 _refine_ls_number_reflns 2110 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.013 _refine_ls_R_factor_all 0.056 _refine_ls_R_factor_gt 0.038 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0321P)^2^+0.285P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.078 _refine_ls_wR_factor_ref 0.082 _reflns_number_gt 1522 _reflns_number_total 2110 _reflns_threshold_expression I>2\s(I) _cod_data_source_file xu2257.cif _cod_data_source_block I _cod_database_code 2214442 _cod_database_fobs_code 2214442 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy O O1 0.5208(3) 0.5222(3) 0.08813(6) 0.0407(6) Uani d . 1 O O2 0.4450(3) 0.6557(3) 0.02943(6) 0.0469(6) Uani d . 1 O O3 0.6178(4) 0.2463(3) 0.03120(7) 0.0498(7) Uani d D 1 H H3O 0.646(6) 0.221(5) 0.0550(7) 0.080(15) Uiso d D 1 O O4 0.1565(3) 0.3851(3) 0.04668(7) 0.0424(6) Uani d . 1 H H4O 0.143(6) 0.362(6) 0.0231(10) 0.081(16) Uiso d . 1 O O5 0.5912(3) 0.2009(2) 0.11522(5) 0.0309(5) Uani d . 1 C C1 0.5460(5) 0.5315(4) 0.04707(9) 0.0367(8) Uani d . 1 H H1 0.6740 0.5455 0.0409 0.044 Uiso calc R 1 C C2 0.4782(5) 0.3666(4) 0.03127(10) 0.0361(8) Uani d . 1 H H2 0.4307 0.3808 0.0047 0.043 Uiso calc R 1 C C3 0.3270(4) 0.3232(4) 0.05910(8) 0.0329(8) Uani d . 1 H H3 0.3210 0.2038 0.0629 0.039 Uiso calc R 1 C C4 0.3786(4) 0.4081(4) 0.09739(8) 0.0340(8) Uani d . 1 H H4 0.2744 0.4705 0.1069 0.041 Uiso calc R 1 C C5 0.4398(4) 0.2931(4) 0.12950(8) 0.0342(8) Uani d . 1 H H5A 0.4740 0.3555 0.1526 0.041 Uiso calc R 1 H H5B 0.3428 0.2190 0.1366 0.041 Uiso calc R 1 C C6 0.5213(6) 0.8169(4) 0.03313(10) 0.0532(11) Uani d . 1 H H6A 0.4504 0.8940 0.0184 0.080 Uiso calc R 1 H H6B 0.6422 0.8162 0.0232 0.080 Uiso calc R 1 H H6C 0.5223 0.8486 0.0602 0.080 Uiso calc R 1 C C7 0.6897(4) 0.1002(4) 0.14349(8) 0.0287(7) Uani d . 1 C C8 0.8065(4) -0.0140(4) 0.11786(8) 0.0272(7) Uani d . 1 C C9 0.9242(4) 0.0581(4) 0.09055(8) 0.0344(8) Uani d . 1 H H9 0.9268 0.1719 0.0878 0.041 Uiso calc R 1 C C10 1.0355(5) -0.0378(4) 0.06784(9) 0.0373(8) Uani d . 1 H H10 1.1104 0.0116 0.0495 0.045 Uiso calc R 1 C C11 1.0372(5) -0.2078(4) 0.07207(9) 0.0382(8) Uani d . 1 H H11 1.1138 -0.2720 0.0569 0.046 Uiso calc R 1 C C12 0.9242(5) -0.2801(4) 0.09896(9) 0.0389(9) Uani d . 1 H H12 0.9236 -0.3939 0.1018 0.047 Uiso calc R 1 C C13 0.8107(5) -0.1839(4) 0.12205(9) 0.0360(8) Uani d . 1 H H13 0.7367 -0.2341 0.1405 0.043 Uiso calc R 1 C C14 0.5546(4) 0.0034(4) 0.16861(8) 0.0283(7) Uani d . 1 C C15 0.4268(4) -0.0927(4) 0.15044(9) 0.0403(8) Uani d . 1 H H15 0.4244 -0.0973 0.1232 0.048 Uiso calc R 1 C C16 0.3028(5) -0.1820(4) 0.17135(11) 0.0485(9) Uani d . 1 H H16 0.2173 -0.2451 0.1583 0.058 Uiso calc R 1 C C17 0.3051(5) -0.1779(4) 0.21152(11) 0.0484(9) Uani d . 1 H H17 0.2228 -0.2397 0.2258 0.058 Uiso calc R 1 C C18 0.4296(5) -0.0822(5) 0.23045(9) 0.0482(10) Uani d . 1 H H18 0.4312 -0.0787 0.2577 0.058 Uiso calc R 1 C C19 0.5529(4) 0.0092(4) 0.20932(8) 0.0368(8) Uani d . 1 H H19 0.6354 0.0752 0.2225 0.044 Uiso calc R 1 C C20 0.8215(4) 0.2061(4) 0.16746(8) 0.0292(7) Uani d . 1 C C21 0.9461(4) 0.1301(4) 0.19168(9) 0.0377(8) Uani d . 1 H H21 0.9453 0.0160 0.1938 0.045 Uiso calc R 1 C C22 1.0720(5) 0.2198(4) 0.21282(10) 0.0434(9) Uani d . 1 H H22 1.1545 0.1660 0.2288 0.052 Uiso calc R 1 C C23 1.0741(5) 0.3882(5) 0.20995(10) 0.0488(10) Uani d . 1 H H23 1.1571 0.4493 0.2243 0.059 Uiso calc R 1 C C24 0.9544(5) 0.4649(4) 0.18615(10) 0.0496(10) Uani d . 1 H H24 0.9563 0.5791 0.1843 0.060 Uiso calc R 1 C C25 0.8290(5) 0.3765(4) 0.16445(9) 0.0393(8) Uani d . 1 H H25 0.7499 0.4315 0.1479 0.047 Uiso calc R 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0557(15) 0.0316(12) 0.0348(12) -0.0128(12) -0.0050(11) -0.0004(10) O2 0.0522(15) 0.0348(13) 0.0538(14) -0.0066(13) -0.0080(14) 0.0111(12) O3 0.0535(17) 0.0537(16) 0.0423(14) 0.0193(14) 0.0049(13) -0.0082(14) O4 0.0360(13) 0.0459(14) 0.0453(14) -0.0008(13) -0.0086(13) -0.0014(13) O5 0.0290(11) 0.0362(11) 0.0274(10) 0.0041(11) 0.0000(10) 0.0036(10) C1 0.0394(19) 0.0359(18) 0.0348(18) -0.0026(18) -0.0024(18) 0.0045(16) C2 0.038(2) 0.0373(19) 0.0326(18) 0.0037(17) -0.0051(16) -0.0032(16) C3 0.0318(17) 0.0281(16) 0.0387(18) 0.0008(16) -0.0057(15) -0.0022(15) C4 0.0365(19) 0.0364(18) 0.0293(16) 0.0012(17) 0.0005(15) -0.0027(15) C5 0.0310(17) 0.0401(18) 0.0313(16) 0.0024(18) 0.0041(15) 0.0025(15) C6 0.070(3) 0.0360(19) 0.053(2) -0.008(2) 0.000(2) 0.0026(18) C7 0.0275(16) 0.0317(16) 0.0268(15) -0.0019(17) -0.0012(14) 0.0045(15) C8 0.0279(17) 0.0272(16) 0.0266(16) -0.0010(15) -0.0030(15) -0.0016(15) C9 0.0351(19) 0.0325(18) 0.0355(17) -0.0028(16) 0.0047(17) 0.0049(15) C10 0.0305(18) 0.043(2) 0.0383(18) -0.0027(17) 0.0033(17) 0.0045(16) C11 0.0379(19) 0.0405(19) 0.0362(18) 0.0052(18) 0.0019(18) -0.0058(17) C12 0.043(2) 0.0292(17) 0.0451(19) 0.0038(18) -0.0015(18) -0.0005(16) C13 0.0361(19) 0.0360(18) 0.0361(19) -0.0024(17) 0.0023(17) 0.0023(17) C14 0.0262(16) 0.0291(16) 0.0295(16) -0.0009(17) 0.0023(14) 0.0038(15) C15 0.0337(18) 0.053(2) 0.0346(18) -0.011(2) 0.0013(16) 0.0028(18) C16 0.039(2) 0.050(2) 0.057(2) -0.014(2) 0.0022(19) 0.003(2) C17 0.039(2) 0.047(2) 0.059(2) -0.008(2) 0.011(2) 0.017(2) C18 0.053(2) 0.060(2) 0.0310(17) -0.001(2) 0.0077(18) 0.0144(19) C19 0.0364(18) 0.0429(19) 0.0311(17) -0.0034(19) -0.0024(16) 0.0024(17) C20 0.0275(16) 0.0304(17) 0.0298(16) -0.0046(16) 0.0021(15) 0.0008(15) C21 0.0364(19) 0.0338(18) 0.0428(18) 0.0004(17) -0.0047(18) -0.0015(16) C22 0.0326(19) 0.053(2) 0.0442(19) 0.000(2) -0.0094(18) -0.0020(19) C23 0.047(2) 0.052(2) 0.048(2) -0.014(2) -0.010(2) -0.009(2) C24 0.060(3) 0.0329(19) 0.056(2) -0.014(2) -0.009(2) -0.0010(18) C25 0.043(2) 0.0362(18) 0.0391(19) -0.0064(19) -0.0057(18) 0.0043(16) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C1 O1 C4 110.4(2) C1 O2 C6 114.3(3) C2 O3 H3O 110(3) C3 O4 H4O 108(3) C5 O5 C7 117.4(2) O2 C1 O1 113.3(3) O2 C1 C2 107.8(3) O1 C1 C2 105.0(3) O2 C1 H1 110.2 O1 C1 H1 110.2 C2 C1 H1 110.2 O3 C2 C3 112.4(3) O3 C2 C1 111.2(3) C3 C2 C1 103.2(3) O3 C2 H2 109.9 C3 C2 H2 109.9 C1 C2 H2 109.9 O4 C3 C2 113.0(2) O4 C3 C4 108.5(3) C2 C3 C4 104.2(3) O4 C3 H3 110.3 C2 C3 H3 110.3 C4 C3 H3 110.3 O1 C4 C5 109.7(2) O1 C4 C3 106.7(2) C5 C4 C3 114.6(3) O1 C4 H4 108.6 C5 C4 H4 108.6 C3 C4 H4 108.6 O5 C5 C4 108.3(2) O5 C5 H5A 110.0 C4 C5 H5A 110.0 O5 C5 H5B 110.0 C4 C5 H5B 110.0 H5A C5 H5B 108.4 O2 C6 H6A 109.5 O2 C6 H6B 109.5 H6A C6 H6B 109.5 O2 C6 H6C 109.5 H6A C6 H6C 109.5 H6B C6 H6C 109.5 O5 C7 C14 109.2(2) O5 C7 C20 110.8(2) C14 C7 C20 114.0(2) O5 C7 C8 104.2(2) C14 C7 C8 112.1(3) C20 C7 C8 106.2(2) C13 C8 C9 118.0(3) C13 C8 C7 123.5(3) C9 C8 C7 118.3(3) C10 C9 C8 120.7(3) C10 C9 H9 119.7 C8 C9 H9 119.7 C9 C10 C11 120.7(3) C9 C10 H10 119.6 C11 C10 H10 119.6 C12 C11 C10 119.3(3) C12 C11 H11 120.4 C10 C11 H11 120.4 C11 C12 C13 120.4(3) C11 C12 H12 119.8 C13 C12 H12 119.8 C8 C13 C12 120.9(3) C8 C13 H13 119.6 C12 C13 H13 119.6 C15 C14 C19 117.5(3) C15 C14 C7 119.4(3) C19 C14 C7 123.1(3) C16 C15 C14 122.0(3) C16 C15 H15 119.0 C14 C15 H15 119.0 C17 C16 C15 119.9(3) C17 C16 H16 120.1 C15 C16 H16 120.1 C16 C17 C18 119.6(3) C16 C17 H17 120.2 C18 C17 H17 120.2 C17 C18 C19 120.5(3) C17 C18 H18 119.8 C19 C18 H18 119.8 C18 C19 C14 120.6(3) C18 C19 H19 119.7 C14 C19 H19 119.7 C21 C20 C25 117.5(3) C21 C20 C7 119.4(3) C25 C20 C7 122.9(3) C20 C21 C22 121.7(3) C20 C21 H21 119.2 C22 C21 H21 119.2 C23 C22 C21 119.7(4) C23 C22 H22 120.2 C21 C22 H22 120.2 C24 C23 C22 119.6(3) C24 C23 H23 120.2 C22 C23 H23 120.2 C23 C24 C25 121.3(3) C23 C24 H24 119.3 C25 C24 H24 119.3 C20 C25 C24 120.2(3) C20 C25 H25 119.9 C24 C25 H25 119.9 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C1 1.415(3) O1 C4 1.441(4) O2 C1 1.395(4) O2 C6 1.434(4) O3 C2 1.425(4) O3 H3O 0.863(19) O4 C3 1.427(4) O4 H4O 0.83(4) O5 C5 1.437(4) O5 C7 1.461(3) C1 C2 1.530(4) C1 H1 0.9800 C2 C3 1.512(4) C2 H2 0.9800 C3 C4 1.526(4) C3 H3 0.9800 C4 C5 1.510(4) C4 H4 0.9800 C5 H5A 0.9700 C5 H5B 0.9700 C6 H6A 0.9600 C6 H6B 0.9600 C6 H6C 0.9600 C7 C14 1.536(4) C7 C20 1.539(4) C7 C8 1.543(4) C8 C13 1.388(4) C8 C9 1.405(4) C9 C10 1.375(4) C9 H9 0.9300 C10 C11 1.390(4) C10 H10 0.9300 C11 C12 1.375(4) C11 H11 0.9300 C12 C13 1.394(4) C12 H12 0.9300 C13 H13 0.9300 C14 C15 1.377(4) C14 C19 1.389(4) C15 C16 1.372(4) C15 H15 0.9300 C16 C17 1.371(4) C16 H16 0.9300 C17 C18 1.370(5) C17 H17 0.9300 C18 C19 1.382(4) C18 H18 0.9300 C19 H19 0.9300 C20 C21 1.386(4) C20 C25 1.390(4) C21 C22 1.388(4) C21 H21 0.9300 C22 C23 1.373(5) C22 H22 0.9300 C23 C24 1.356(5) C23 H23 0.9300 C24 C25 1.390(4) C24 H24 0.9300 C25 H25 0.9300 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O3 H3O O5 . 0.863(19) 2.10(3) 2.896(3) 153(4) y O4 H4O O3 4_455 0.83(4) 2.06(4) 2.877(3) 168(4) y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C6 O2 C1 O1 79.8(4) C6 O2 C1 C2 -164.6(3) C4 O1 C1 O2 91.9(3) C4 O1 C1 C2 -25.4(3) O2 C1 C2 O3 151.1(3) O1 C1 C2 O3 -87.9(3) O2 C1 C2 C3 -88.2(3) O1 C1 C2 C3 32.8(3) O3 C2 C3 O4 -150.2(3) C1 C2 C3 O4 89.9(3) O3 C2 C3 C4 92.3(3) C1 C2 C3 C4 -27.7(3) C1 O1 C4 C5 132.3(3) C1 O1 C4 C3 7.6(3) O4 C3 C4 O1 -107.2(3) C2 C3 C4 O1 13.5(3) O4 C3 C4 C5 131.3(3) C2 C3 C4 C5 -108.1(3) C7 O5 C5 C4 170.8(2) O1 C4 C5 O5 -62.1(3) C3 C4 C5 O5 57.8(3) C5 O5 C7 C14 45.8(3) C5 O5 C7 C20 -80.5(3) C5 O5 C7 C8 165.7(2) O5 C7 C8 C13 -128.3(3) C14 C7 C8 C13 -10.4(4) C20 C7 C8 C13 114.6(3) O5 C7 C8 C9 56.1(3) C14 C7 C8 C9 174.0(3) C20 C7 C8 C9 -61.0(3) C13 C8 C9 C10 2.1(5) C7 C8 C9 C10 177.9(3) C8 C9 C10 C11 -1.6(5) C9 C10 C11 C12 0.8(6) C10 C11 C12 C13 -0.7(5) C9 C8 C13 C12 -1.9(5) C7 C8 C13 C12 -177.6(3) C11 C12 C13 C8 1.3(5) O5 C7 C14 C15 53.9(4) C20 C7 C14 C15 178.4(3) C8 C7 C14 C15 -60.9(4) O5 C7 C14 C19 -125.3(3) C20 C7 C14 C19 -0.8(4) C8 C7 C14 C19 119.9(3) C19 C14 C15 C16 -0.9(5) C7 C14 C15 C16 179.9(3) C14 C15 C16 C17 -0.5(6) C15 C16 C17 C18 1.1(6) C16 C17 C18 C19 -0.3(5) C17 C18 C19 C14 -1.1(5) C15 C14 C19 C18 1.7(5) C7 C14 C19 C18 -179.2(3) O5 C7 C20 C21 -170.5(3) C14 C7 C20 C21 66.0(4) C8 C7 C20 C21 -57.9(4) O5 C7 C20 C25 5.8(4) C14 C7 C20 C25 -117.7(4) C8 C7 C20 C25 118.4(3) C25 C20 C21 C22 1.2(5) C7 C20 C21 C22 177.7(3) C20 C21 C22 C23 0.2(5) C21 C22 C23 C24 -0.8(6) C22 C23 C24 C25 0.0(6) C21 C20 C25 C24 -1.9(5) C7 C20 C25 C24 -178.3(3) C23 C24 C25 C20 1.4(6)