#------------------------------------------------------------------------------ #$Date: 2016-02-21 00:03:34 +0000 (Sun, 21 Feb 2016) $ #$Revision: 176798 $ #$URL: svn://www.crystallography.net/cod/cif/2/23/88/2238884.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2238884 loop_ _publ_author_name 'Gulati, Shivani' 'Bhasin, K. K.' 'Potapov, V. A.' 'Arora, Ekta' 'Butcher, Ray J.' _publ_section_title ; 2-(Phenylselenonyl)pyridine ; _journal_issue 12 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o1791 _journal_paper_doi 10.1107/S1600536813029978 _journal_volume 69 _journal_year 2013 _chemical_formula_iupac 'C11 H9 N O2 Se' _chemical_formula_moiety 'C11 H9 N O2 Se' _chemical_formula_sum 'C11 H9 N O2 Se' _chemical_formula_weight 266.15 _chemical_name_systematic ; 2-(Phenylselenonyl)pyridine ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 80.683(6) _cell_angle_beta 83.494(6) _cell_angle_gamma 74.614(7) _cell_formula_units_Z 2 _cell_length_a 6.1598(5) _cell_length_b 7.7223(6) _cell_length_c 11.4952(7) _cell_measurement_reflns_used 2941 _cell_measurement_temperature 123(2) _cell_measurement_theta_max 37.4840 _cell_measurement_theta_min 3.0766 _cell_volume 518.83(7) _computing_cell_refinement ; CrysAlis PRO (Agilent, 2012) ; _computing_data_collection ; CrysAlis PRO (Agilent, 2012) ; _computing_data_reduction ; CrysAlis PRO (Agilent, 2012) ; _computing_molecular_graphics 'SHELXTL (Sheldrick, 2008)' _computing_publication_material 'SHELXTL (Sheldrick, 2008)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS97 (Sheldrick, 2008)' _diffrn_ambient_temperature 123(2) _diffrn_detector_area_resol_mean 10.5081 _diffrn_measured_fraction_theta_full 0.995 _diffrn_measured_fraction_theta_max 0.945 _diffrn_measurement_device_type 'Agilent Xcalibur (Ruby, Gemini)' _diffrn_measurement_method '\w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Enhance (Mo) X-ray Source' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0405 _diffrn_reflns_av_sigmaI/netI 0.0713 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 19 _diffrn_reflns_limit_l_min -18 _diffrn_reflns_number 8688 _diffrn_reflns_theta_full 25.50 _diffrn_reflns_theta_max 37.57 _diffrn_reflns_theta_min 3.08 _exptl_absorpt_coefficient_mu 3.595 _exptl_absorpt_correction_T_max 0.613 _exptl_absorpt_correction_T_min 0.383 _exptl_absorpt_correction_type analytical _exptl_absorpt_process_details ; (CrysAlis PRO and CrysAlis RED; Agilent, 2012) ; _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.704 _exptl_crystal_density_method 'not measured' _exptl_crystal_description 'triangular plate' _exptl_crystal_F_000 264 _exptl_crystal_size_max 0.5019 _exptl_crystal_size_mid 0.2584 _exptl_crystal_size_min 0.1590 _refine_diff_density_max 0.643 _refine_diff_density_min -0.758 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.013 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 136 _refine_ls_number_reflns 5196 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.013 _refine_ls_R_factor_all 0.0696 _refine_ls_R_factor_gt 0.0469 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0241P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0798 _refine_ls_wR_factor_ref 0.0901 _reflns_number_gt 3965 _reflns_number_total 5196 _reflns_threshold_expression I>2sigma(I) _cod_data_source_file jj2170.cif _cod_data_source_block I _cod_database_code 2238884 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_symmetry_multiplicity Se Se 0.80434(4) 0.23043(3) 0.224458(18) 0.02645(6) Uani d . 1 1 O O1 1.0283(3) 0.2030(2) 0.13351(14) 0.0370(4) Uani d . 1 1 O O2 0.6629(3) 0.0770(2) 0.24217(15) 0.0380(4) Uani d . 1 1 N N1A 0.6710(4) 0.6075(3) 0.17338(18) 0.0397(5) Uani d . 1 1 C C1A 0.5932(3) 0.4583(3) 0.17700(17) 0.0247(4) Uani d . 1 1 C C2A 0.3857(3) 0.4556(3) 0.14449(17) 0.0277(4) Uani d . 1 1 H H2AA 0.3426 0.3453 0.1487 0.033 Uiso calc R 1 1 C C3A 0.2427(4) 0.6216(4) 0.10521(19) 0.0358(5) Uani d . 1 1 H H3AA 0.0978 0.6274 0.0816 0.043 Uiso calc R 1 1 C C4A 0.3131(5) 0.7786(3) 0.1008(2) 0.0427(6) Uani d . 1 1 H H4AA 0.2166 0.8929 0.0741 0.051 Uiso calc R 1 1 C C5A 0.5245(5) 0.7685(3) 0.1354(2) 0.0453(7) Uani d . 1 1 H H5AA 0.5696 0.8777 0.1327 0.054 Uiso calc R 1 1 C C1B 0.8984(4) 0.2491(3) 0.37495(17) 0.0256(4) Uani d . 1 1 C C2B 0.7332(4) 0.3166(3) 0.45649(18) 0.0298(4) Uani d . 1 1 H H2BA 0.5799 0.3593 0.4382 0.036 Uiso calc R 1 1 C C3B 0.7969(4) 0.3207(4) 0.5661(2) 0.0399(6) Uani d . 1 1 H H3BA 0.6853 0.3666 0.6251 0.048 Uiso calc R 1 1 C C4B 1.0186(4) 0.2598(3) 0.5925(2) 0.0369(5) Uani d . 1 1 H H4BA 1.0587 0.2646 0.6691 0.044 Uiso calc R 1 1 C C5B 1.1842(4) 0.1913(3) 0.50800(19) 0.0339(5) Uani d . 1 1 H H5BA 1.3373 0.1479 0.5267 0.041 Uiso calc R 1 1 C C6B 1.1244(4) 0.1864(3) 0.39527(18) 0.0290(4) Uani d . 1 1 H H6BA 1.2344 0.1419 0.3351 0.035 Uiso calc R 1 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Se 0.02928(11) 0.02457(10) 0.02608(11) -0.00452(8) -0.00550(7) -0.00652(8) O1 0.0355(9) 0.0416(10) 0.0296(8) 0.0001(7) 0.0011(6) -0.0110(7) O2 0.0452(10) 0.0285(8) 0.0461(10) -0.0152(7) -0.0171(8) -0.0027(7) N1A 0.0512(13) 0.0364(11) 0.0364(11) -0.0169(10) -0.0067(9) -0.0069(9) C1A 0.0273(9) 0.0254(9) 0.0207(8) -0.0040(7) -0.0021(7) -0.0053(7) C2A 0.0274(10) 0.0341(11) 0.0219(9) -0.0085(8) 0.0002(7) -0.0044(8) C3A 0.0293(11) 0.0469(14) 0.0254(10) -0.0010(10) 0.0005(8) -0.0044(10) C4A 0.0578(16) 0.0332(12) 0.0253(11) 0.0083(11) 0.0003(10) -0.0052(10) C5A 0.078(2) 0.0304(12) 0.0326(12) -0.0202(13) -0.0063(12) -0.0063(10) C1B 0.0283(10) 0.0251(9) 0.0233(9) -0.0062(8) -0.0023(7) -0.0033(8) C2B 0.0265(10) 0.0337(11) 0.0262(10) -0.0013(8) -0.0007(7) -0.0070(9) C3B 0.0440(14) 0.0417(14) 0.0281(11) 0.0002(11) 0.0024(9) -0.0092(10) C4B 0.0481(14) 0.0371(12) 0.0248(10) -0.0079(11) -0.0055(9) -0.0051(9) C5B 0.0323(11) 0.0383(12) 0.0318(11) -0.0101(10) -0.0096(9) 0.0003(10) C6B 0.0255(10) 0.0334(11) 0.0271(10) -0.0071(8) -0.0004(7) -0.0032(9) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Se Se -0.0929 2.2259 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O1 Se O2 117.59(9) O1 Se C1B 106.80(8) O2 Se C1B 109.14(8) O1 Se C1A 110.40(9) O2 Se C1A 106.21(9) C1B Se C1A 106.17(8) C1A N1A C5A 115.3(2) N1A C1A C2A 126.1(2) N1A C1A Se 115.30(16) C2A C1A Se 118.53(16) C1A C2A C3A 116.9(2) C1A C2A H2AA 121.6 C3A C2A H2AA 121.6 C4A C3A C2A 119.4(2) C4A C3A H3AA 120.3 C2A C3A H3AA 120.3 C3A C4A C5A 119.8(2) C3A C4A H4AA 120.1 C5A C4A H4AA 120.1 N1A C5A C4A 122.5(2) N1A C5A H5AA 118.8 C4A C5A H5AA 118.8 C2B C1B C6B 124.39(19) C2B C1B Se 116.78(16) C6B C1B Se 118.75(15) C1B C2B C3B 117.2(2) C1B C2B H2BA 121.4 C3B C2B H2BA 121.4 C2B C3B C4B 121.4(2) C2B C3B H3BA 119.3 C4B C3B H3BA 119.3 C3B C4B C5B 120.3(2) C3B C4B H4BA 119.8 C5B C4B H4BA 119.8 C4B C5B C6B 119.5(2) C4B C5B H5BA 120.3 C6B C5B H5BA 120.3 C1B C6B C5B 117.1(2) C1B C6B H6BA 121.4 C5B C6B H6BA 121.4 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Se O1 1.6218(16) Se O2 1.6234(16) Se C1B 1.9240(19) Se C1A 1.929(2) N1A C1A 1.354(3) N1A C5A 1.367(3) C1A C2A 1.378(3) C2A C3A 1.388(3) C2A H2AA 0.9500 C3A C4A 1.383(4) C3A H3AA 0.9500 C4A C5A 1.383(4) C4A H4AA 0.9500 C5A H5AA 0.9500 C1B C2B 1.359(3) C1B C6B 1.381(3) C2B C3B 1.368(3) C2B H2BA 0.9500 C3B C4B 1.373(3) C3B H3BA 0.9500 C4B C5B 1.385(3) C4B H4BA 0.9500 C5B C6B 1.395(3) C5B H5BA 0.9500 C6B H6BA 0.9500 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA C2A H2AA O1 1_455 0.95 2.50 3.331(3) 145.9 C4A H4AA O1 1_465 0.95 2.53 3.341(3) 142.8 C5A H5AA O2 1_565 0.95 2.35 3.188(3) 146.3 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C5A N1A C1A C2A 1.2(3) C5A N1A C1A Se 177.60(16) O1 Se C1A N1A -60.19(17) O2 Se C1A N1A 171.30(15) C1B Se C1A N1A 55.21(17) O1 Se C1A C2A 116.53(16) O2 Se C1A C2A -11.98(18) C1B Se C1A C2A -128.08(16) N1A C1A C2A C3A -0.5(3) Se C1A C2A C3A -176.84(14) C1A C2A C3A C4A -0.1(3) C2A C3A C4A C5A 0.0(3) C1A N1A C5A C4A -1.2(3) C3A C4A C5A N1A 0.7(4) O1 Se C1B C2B 164.23(17) O2 Se C1B C2B -67.68(19) C1A Se C1B C2B 46.41(19) O1 Se C1B C6B -18.7(2) O2 Se C1B C6B 109.38(18) C1A Se C1B C6B -136.53(18) C6B C1B C2B C3B -0.6(4) Se C1B C2B C3B 176.31(18) C1B C2B C3B C4B 0.3(4) C2B C3B C4B C5B -0.3(4) C3B C4B C5B C6B 0.7(4) C2B C1B C6B C5B 0.9(3) Se C1B C6B C5B -175.90(16) C4B C5B C6B C1B -0.9(3)