#------------------------------------------------------------------------------ #$Date: 2016-02-21 09:56:54 +0000 (Sun, 21 Feb 2016) $ #$Revision: 176809 $ #$URL: svn://www.crystallography.net/cod/cif/2/30/03/2300301.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_2300301 loop_ _publ_author_name 'Ye, Heng-Yun' 'Cai, Hong-Ling' 'Ge, Jia-Zeng' 'Xiong, Ren-Gen' _publ_section_title ; Reversible structural phase transition of pyridinium-4-carboxylic acid perchlorate ; _journal_issue '5 Part 1' _journal_name_full 'Journal of Applied Crystallography' _journal_page_first 1031 _journal_page_last 1035 _journal_paper_doi 10.1107/S0021889810024039 _journal_volume 43 _journal_year 2010 _chemical_formula_sum 'C6 H6 Cl N O6' _chemical_formula_weight 223.57 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 137.919(17) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 5.5046(11) _cell_length_b 13.574(3) _cell_length_c 17.423(5) _cell_measurement_temperature 298(2) _cell_volume 872.5(5) _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 298(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0388 _diffrn_reflns_av_sigmaI/netI 0.0323 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -7 _diffrn_reflns_limit_k_max 17 _diffrn_reflns_limit_k_min -17 _diffrn_reflns_limit_l_max 22 _diffrn_reflns_limit_l_min -22 _diffrn_reflns_number 8786 _diffrn_reflns_theta_full 27.48 _diffrn_reflns_theta_max 27.48 _diffrn_reflns_theta_min 3.00 _exptl_absorpt_coefficient_mu 0.443 _exptl_absorpt_correction_T_max 1.0000 _exptl_absorpt_correction_T_min 0.8771 _exptl_absorpt_correction_type multi-scan _exptl_crystal_density_diffrn 1.702 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 456 _exptl_crystal_size_max 0.42 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.30 _refine_diff_density_max 0.734 _refine_diff_density_min -0.425 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.072 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 158 _refine_ls_number_reflns 1998 _refine_ls_number_restraints 79 _refine_ls_restrained_S_all 1.070 _refine_ls_R_factor_all 0.0805 _refine_ls_R_factor_gt 0.0585 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0796P)^2^+0.7580P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1551 _refine_ls_wR_factor_ref 0.1699 _reflns_number_gt 1484 _reflns_number_total 1998 _reflns_threshold_expression >2sigma(I) _cod_data_source_file wf5065.cif _cod_data_source_block 298K _cod_original_cell_volume 872.5(3) _cod_original_sg_symbol_H-M 'p 21/c' _cod_database_code 2300301 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group C C5 0.2160(10) 0.3410(2) 0.7842(3) 0.0523(8) Uani d . 1 . . H H5A 0.3117 0.2816 0.7893 0.063 Uiso calc R 1 . . C C4 0.0989(9) 0.4103(2) 0.7055(3) 0.0480(8) Uani d . 1 . . H H4A 0.1167 0.3988 0.6572 0.058 Uiso calc R 1 . . C C3 -0.0461(8) 0.4974(2) 0.6984(2) 0.0401(7) Uani d . 1 . . C C2 -0.0763(9) 0.5125(2) 0.7695(3) 0.0474(8) Uani d . 1 . . H H2A -0.1809 0.5699 0.7639 0.057 Uiso calc R 1 . . C C1 0.0498(10) 0.4418(3) 0.8481(3) 0.0545(9) Uani d . 1 . . H H1A 0.0366 0.4513 0.8978 0.065 Uiso calc R 1 . . C C6 -0.1607(9) 0.5780(2) 0.6177(3) 0.0464(8) Uani d . 1 . . N N1 0.1921(8) 0.3590(2) 0.8532(2) 0.0511(7) Uani d . 1 . . H H1B 0.2719 0.3154 0.9034 0.061 Uiso calc R 1 . . O O1 -0.3160(7) 0.65041(17) 0.6028(2) 0.0586(7) Uani d . 1 . . O O2 -0.0688(9) 0.55910(19) 0.5681(2) 0.0689(8) Uani d . 1 . . H H2 -0.1127 0.6072 0.5310 0.103 Uiso calc R 1 . . Cl Cl1 -0.270(4) 0.8025(10) 0.4111(13) 0.0433(8) Uani d PD 0.33 A 1 O O3 -0.501(7) 0.811(2) 0.423(3) 0.0679(17) Uani d PD 0.33 A 1 O O4 -0.074(5) 0.7089(8) 0.4593(10) 0.0651(16) Uani d PD 0.33 A 1 O O5 -0.490(6) 0.8058(11) 0.2891(11) 0.072(2) Uani d PD 0.33 A 1 O O6 -0.013(3) 0.8843(11) 0.4694(11) 0.083(2) Uani d PD 0.33 A 1 Cl Cl1B -0.297(4) 0.8018(10) 0.4105(12) 0.0433(8) Uani d PD 0.33 B 2 O O3B -0.535(6) 0.8071(19) 0.418(2) 0.0679(17) Uani d PD 0.33 B 2 O O4B -0.030(4) 0.7313(9) 0.4892(9) 0.0651(16) Uani d PD 0.33 B 2 O O5B -0.494(5) 0.7760(10) 0.2991(13) 0.072(2) Uani d PD 0.33 B 2 O O6B -0.130(3) 0.8937(11) 0.4410(13) 0.083(2) Uani d PD 0.33 B 2 Cl Cl1A -0.319(4) 0.7909(9) 0.4047(13) 0.0433(8) Uani d PD 0.33 C 3 O O3A -0.557(7) 0.8203(16) 0.410(3) 0.0679(17) Uani d PD 0.33 C 3 O O4A -0.305(3) 0.6847(6) 0.4062(7) 0.0651(16) Uani d PD 0.33 C 3 O O5A -0.464(8) 0.8233(14) 0.2987(13) 0.072(2) Uani d PD 0.33 C 3 O O6A 0.030(3) 0.8306(8) 0.4991(9) 0.083(2) Uani d PD 0.33 C 3 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C5 0.065(2) 0.0362(16) 0.063(2) 0.0070(15) 0.049(2) 0.0059(15) C4 0.065(2) 0.0375(16) 0.0520(19) 0.0014(15) 0.0466(18) -0.0031(14) C3 0.0437(16) 0.0316(14) 0.0384(15) -0.0040(12) 0.0285(14) -0.0047(12) C2 0.0575(19) 0.0372(16) 0.0578(19) 0.0023(14) 0.0459(18) -0.0019(14) C1 0.071(2) 0.050(2) 0.059(2) -0.0027(17) 0.054(2) -0.0015(16) C6 0.0542(18) 0.0348(16) 0.0408(16) -0.0044(14) 0.0324(16) -0.0039(12) N1 0.0593(17) 0.0423(15) 0.0535(16) 0.0030(13) 0.0425(15) 0.0090(12) O1 0.0688(16) 0.0388(13) 0.0634(16) 0.0119(11) 0.0476(14) 0.0105(11) O2 0.111(2) 0.0501(15) 0.0719(18) 0.0153(15) 0.0760(19) 0.0140(13) Cl1 0.0446(16) 0.0462(13) 0.0409(9) 0.0033(11) 0.0323(12) 0.0024(9) O3 0.069(4) 0.081(3) 0.070(4) 0.015(3) 0.056(4) 0.007(3) O4 0.083(4) 0.067(4) 0.064(5) 0.029(4) 0.060(4) 0.019(3) O5 0.090(3) 0.078(7) 0.059(2) 0.012(5) 0.058(2) 0.021(4) O6 0.069(5) 0.082(4) 0.081(6) -0.023(4) 0.051(5) -0.008(4) Cl1B 0.0446(16) 0.0462(13) 0.0409(9) 0.0033(11) 0.0323(12) 0.0024(9) O3B 0.069(4) 0.081(3) 0.070(4) 0.015(3) 0.056(4) 0.007(3) O4B 0.083(4) 0.067(4) 0.064(5) 0.029(4) 0.060(4) 0.019(3) O5B 0.090(3) 0.078(7) 0.059(2) 0.012(5) 0.058(2) 0.021(4) O6B 0.069(5) 0.082(4) 0.081(6) -0.023(4) 0.051(5) -0.008(4) Cl1A 0.0446(16) 0.0462(13) 0.0409(9) 0.0033(11) 0.0323(12) 0.0024(9) O3A 0.069(4) 0.081(3) 0.070(4) 0.015(3) 0.056(4) 0.007(3) O4A 0.083(4) 0.067(4) 0.064(5) 0.029(4) 0.060(4) 0.019(3) O5A 0.090(3) 0.078(7) 0.059(2) 0.012(5) 0.058(2) 0.021(4) O6A 0.069(5) 0.082(4) 0.081(6) -0.023(4) 0.051(5) -0.008(4) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag N1 C5 C4 . . 119.5(3) ? N1 C5 H5A . . 120.3 ? C4 C5 H5A . . 120.3 ? C5 C4 C3 . . 119.4(3) ? C5 C4 H4A . . 120.3 ? C3 C4 H4A . . 120.3 ? C4 C3 C2 . . 119.5(3) ? C4 C3 C6 . . 121.5(3) ? C2 C3 C6 . . 119.0(3) ? C1 C2 C3 . . 119.0(3) ? C1 C2 H2A . . 120.5 ? C3 C2 H2A . . 120.5 ? N1 C1 C2 . . 119.6(3) ? N1 C1 H1A . . 120.2 ? C2 C1 H1A . . 120.2 ? O1 C6 O2 . . 125.5(3) ? O1 C6 C3 . . 122.5(3) ? O2 C6 C3 . . 112.0(3) ? C5 N1 C1 . . 123.0(3) ? C5 N1 H1B . . 118.5 ? C1 N1 H1B . . 118.5 ? C6 O2 H2 . . 109.5 ? O3 Cl1 O6 . . 110.0(10) ? O3 Cl1 O4 . . 109.9(10) ? O6 Cl1 O4 . . 109.9(9) ? O3 Cl1 O5 . . 109.9(10) ? O6 Cl1 O5 . . 108.4(9) ? O4 Cl1 O5 . . 108.8(9) ? O5B Cl1B O6B . . 111.5(10) ? O5B Cl1B O4B . . 111.0(10) ? O6B Cl1B O4B . . 108.8(9) ? O5B Cl1B O3B . . 109.0(10) ? O6B Cl1B O3B . . 108.1(10) ? O4B Cl1B O3B . . 108.4(10) ? O6A Cl1A O3A . . 109.8(10) ? O6A Cl1A O5A . . 110.9(10) ? O3A Cl1A O5A . . 109.6(10) ? O6A Cl1A O4A . . 110.5(9) ? O3A Cl1A O4A . . 108.4(10) ? O5A Cl1A O4A . . 107.5(9) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag C5 N1 . 1.325(4) ? C5 C4 . 1.367(5) ? C5 H5A . 0.9300 ? C4 C3 . 1.380(4) ? C4 H4A . 0.9300 ? C3 C2 . 1.383(4) ? C3 C6 . 1.501(4) ? C2 C1 . 1.367(5) ? C2 H2A . 0.9300 ? C1 N1 . 1.335(4) ? C1 H1A . 0.9300 ? C6 O1 . 1.198(4) ? C6 O2 . 1.310(4) ? N1 H1B . 0.8600 ? O2 H2 . 0.8200 ? Cl1 O3 . 1.442(13) ? Cl1 O6 . 1.460(13) ? Cl1 O4 . 1.462(13) ? Cl1 O5 . 1.471(13) ? Cl1B O5B . 1.393(15) ? Cl1B O6B . 1.398(14) ? Cl1B O4B . 1.401(14) ? Cl1B O3B . 1.411(15) ? Cl1A O6A . 1.414(12) ? Cl1A O3A . 1.432(12) ? Cl1A O5A . 1.434(12) ? Cl1A O4A . 1.443(12) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H1B O3 2_546 0.86 2.25 2.94(3) 137.8 N1 H1B O1 2_546 0.86 2.26 2.880(4) 128.6 N1 H1B O3A 2_546 0.86 2.34 3.01(4) 134.9 O2 H2 O4A . 0.82 1.88 2.666(8) 160.3 O2 H2 O4 . 0.82 1.98 2.767(13) 161.6