#------------------------------------------------------------------------------ #$Date: 2016-02-21 09:56:54 +0000 (Sun, 21 Feb 2016) $ #$Revision: 176809 $ #$URL: svn://www.crystallography.net/cod/cif/2/30/03/2300316.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2300316 loop_ _publ_author_name 'Eccles, Kevin S.' 'Stokes, Stephen P.' 'Daly, Carla A.' 'Barry, Nicola M.' 'McSweeney, Sharon P.' 'O'Neill, Damian J.' 'Kelly, Dawn M.' 'Jennings, W. Brian' 'N\'i Dhubhghaill, O. M.' 'Moynihan, Humphrey A.' 'Maguire, Anita R.' 'Lawrence, Simon E.' _publ_section_title ; Evaluation of the Bruker SMART X2S: crystallography for the nonspecialist? ; _journal_coeditor_code KK5074 _journal_issue 1 _journal_name_full 'Journal of Applied Crystallography' _journal_page_first 213 _journal_page_last 215 _journal_paper_doi 10.1107/S0021889810042561 _journal_volume 44 _journal_year 2011 _chemical_formula_moiety 'C16 H18 Cl2 N2 Pd' _chemical_formula_sum 'C16 H18 Cl2 N2 Pd' _chemical_formula_weight 415.62 _chemical_name_systematic ; ? ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 72.593(4) _cell_angle_beta 78.780(5) _cell_angle_gamma 83.039(4) _cell_formula_units_Z 2 _cell_length_a 8.5305(11) _cell_length_b 9.6211(14) _cell_length_c 10.9880(16) _cell_measurement_reflns_used 4927 _cell_measurement_temperature 300(2) _cell_measurement_theta_max 25.20 _cell_measurement_theta_min 2.52 _cell_volume 842.2(2) _computing_cell_refinement 'Bruker SAINT' _computing_data_collection 'Bruker GIS' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker APEX2' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 300(2) _diffrn_measured_fraction_theta_full 0.987 _diffrn_measured_fraction_theta_max 0.987 _diffrn_measurement_device_type 'Bruker SMART X2S' _diffrn_measurement_method '\w scans' _diffrn_radiation_monochromator 'doubly curved silicon crystal' _diffrn_radiation_source 'micro-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0248 _diffrn_reflns_av_sigmaI/netI 0.0250 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 13 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 8425 _diffrn_reflns_theta_full 25.26 _diffrn_reflns_theta_max 25.26 _diffrn_reflns_theta_min 1.97 _exptl_absorpt_coefficient_mu 1.413 _exptl_absorpt_correction_T_max 0.7751 _exptl_absorpt_correction_T_min 0.5326 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SADABS V2008/1 (Bruker AXS)' _exptl_crystal_colour orange _exptl_crystal_density_diffrn 1.639 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 416 _exptl_crystal_size_max 0.51 _exptl_crystal_size_mid 0.31 _exptl_crystal_size_min 0.19 _refine_diff_density_max 0.660 _refine_diff_density_min -0.777 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.227 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 192 _refine_ls_number_reflns 3017 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.227 _refine_ls_R_factor_all 0.0290 _refine_ls_R_factor_gt 0.0218 _refine_ls_shift/su_max 0.011 _refine_ls_shift/su_mean 0.002 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0530P)^2^+0.1355P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0637 _refine_ls_wR_factor_ref 0.0913 _reflns_number_gt 2740 _reflns_number_total 3017 _reflns_threshold_expression >2sigma(I) _cod_data_source_file kk5074.cif _cod_data_source_block Compound_4_X2S _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1555 2011-01-17 13:19:09Z saulius ; _cod_original_sg_symbol_H-M P-1 _cod_database_code 2300316 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group Pd Pd1 0.24612(3) 1.03943(2) 0.48490(2) 0.03536(12) Uani d . 1 . . Cl Cl1 0.32147(13) 1.22355(9) 0.54961(10) 0.0541(3) Uani d . 1 . . Cl Cl2 0.16898(12) 1.21023(10) 0.30576(10) 0.0561(3) Uani d . 1 . . N N1 0.3076(3) 0.8746(3) 0.6379(3) 0.0322(6) Uani d . 1 . . N N2 0.1938(3) 0.8650(3) 0.4349(3) 0.0363(6) Uani d . 1 . . C C1 0.3700(4) 0.9005(3) 0.7440(3) 0.0375(7) Uani d . 1 . . H H1A 0.4518 0.9702 0.7077 0.045 Uiso calc R 1 . . H H1B 0.4203 0.8098 0.7913 0.045 Uiso calc R 1 . . C C2 0.2419(4) 0.9582(4) 0.8385(3) 0.0388(7) Uani d . 1 . . H H2 0.1848 1.0452 0.7895 0.047 Uiso calc R 1 . . C C3 0.3271(5) 1.0024(5) 0.9309(5) 0.0674(12) Uani d . 1 . . H H3A 0.2490 1.0389 0.9915 0.101 Uiso calc R 1 . . H H3B 0.3984 1.0770 0.8821 0.101 Uiso calc R 1 . . H H3C 0.3872 0.9188 0.9768 0.101 Uiso calc R 1 . . C C4 0.1210(4) 0.8459(4) 0.9145(4) 0.0495(9) Uani d . 1 . . H H4A 0.0625 0.8255 0.8562 0.074 Uiso calc R 1 . . H H4B 0.0480 0.8838 0.9771 0.074 Uiso calc R 1 . . H H4C 0.1765 0.7577 0.9581 0.074 Uiso calc R 1 . . C C5 0.2885(4) 0.7449(3) 0.6331(3) 0.0339(7) Uani d . 1 . . C C6 0.2293(4) 0.7342(4) 0.5192(3) 0.0365(7) Uani d . 1 . . C C7 0.1374(4) 0.8661(4) 0.3301(3) 0.0491(9) Uani d . 1 . . H H7 0.1128 0.9552 0.2723 0.059 Uiso calc R 1 . . C C8 0.1145(5) 0.7389(5) 0.3047(4) 0.0570(10) Uani d . 1 . . H H8 0.0720 0.7431 0.2318 0.068 Uiso calc R 1 . . C C9 0.1541(5) 0.6058(4) 0.3866(4) 0.0522(9) Uani d . 1 . . H H9 0.1425 0.5193 0.3689 0.063 Uiso calc R 1 . . C C10 0.2115(4) 0.6045(4) 0.4961(3) 0.0435(8) Uani d . 1 . . H H10 0.2382 0.5162 0.5541 0.052 Uiso calc R 1 . . C C11 0.3179(4) 0.6085(3) 0.7383(3) 0.0354(7) Uani d . 1 . . C C12 0.1856(4) 0.5352(4) 0.8152(4) 0.0456(8) Uani d . 1 . . H H12 0.0830 0.5666 0.7970 0.055 Uiso calc R 1 . . C C13 0.2091(5) 0.4148(4) 0.9195(4) 0.0573(10) Uani d . 1 . . H H13 0.1212 0.3671 0.9723 0.069 Uiso calc R 1 . . C C14 0.3615(5) 0.3650(4) 0.9456(4) 0.0581(10) Uani d . 1 . . H H14 0.3761 0.2850 1.0160 0.070 Uiso calc R 1 . . C C15 0.4907(5) 0.4347(4) 0.8668(4) 0.0562(10) Uani d . 1 . . H H15 0.5933 0.3998 0.8830 0.067 Uiso calc R 1 . . C C16 0.4713(4) 0.5558(4) 0.7635(3) 0.0451(8) Uani d . 1 . . H H16 0.5603 0.6020 0.7110 0.054 Uiso calc R 1 . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Pd1 0.03294(17) 0.02393(16) 0.03945(18) 0.00005(11) -0.00020(11) 0.00114(11) Cl1 0.0677(6) 0.0262(4) 0.0608(6) -0.0091(4) 0.0001(5) -0.0057(4) Cl2 0.0551(6) 0.0400(5) 0.0576(6) -0.0016(4) -0.0152(4) 0.0127(4) N1 0.0285(13) 0.0254(13) 0.0381(14) -0.0016(10) -0.0011(11) -0.0049(11) N2 0.0338(14) 0.0305(14) 0.0359(15) 0.0016(11) -0.0013(11) -0.0007(11) C1 0.0328(16) 0.0295(16) 0.0499(19) -0.0017(13) -0.0106(14) -0.0084(14) C2 0.0399(17) 0.0305(16) 0.0482(19) -0.0004(14) -0.0125(15) -0.0124(14) C3 0.063(3) 0.070(3) 0.087(3) -0.002(2) -0.024(2) -0.043(3) C4 0.053(2) 0.048(2) 0.046(2) -0.0086(17) -0.0001(16) -0.0150(17) C5 0.0311(15) 0.0279(15) 0.0364(17) -0.0015(13) 0.0005(13) -0.0037(13) C6 0.0318(16) 0.0329(17) 0.0375(17) 0.0010(13) 0.0008(13) -0.0042(14) C7 0.056(2) 0.048(2) 0.039(2) 0.0043(18) -0.0158(17) -0.0039(16) C8 0.063(2) 0.068(3) 0.044(2) -0.003(2) -0.0174(18) -0.018(2) C9 0.055(2) 0.050(2) 0.055(2) -0.0029(18) -0.0053(18) -0.0221(18) C10 0.051(2) 0.0329(17) 0.045(2) -0.0022(15) -0.0042(16) -0.0119(15) C11 0.0423(18) 0.0241(15) 0.0364(17) -0.0027(13) -0.0047(14) -0.0043(13) C12 0.0462(19) 0.0321(17) 0.052(2) -0.0065(15) -0.0060(16) -0.0028(15) C13 0.064(2) 0.037(2) 0.058(2) -0.0154(19) 0.0031(19) 0.0032(17) C14 0.087(3) 0.0318(18) 0.046(2) -0.001(2) -0.016(2) 0.0045(16) C15 0.060(2) 0.042(2) 0.059(2) 0.0085(18) -0.0198(19) -0.0005(18) C16 0.0433(19) 0.0354(18) 0.048(2) 0.0017(15) -0.0036(15) -0.0022(15) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag N2 Pd1 N1 . . 80.34(11) ? N2 Pd1 Cl1 . . 175.21(8) ? N1 Pd1 Cl1 . . 95.52(8) ? N2 Pd1 Cl2 . . 94.63(8) ? N1 Pd1 Cl2 . . 174.96(7) ? Cl1 Pd1 Cl2 . . 89.52(4) ? C5 N1 C1 . . 122.7(3) ? C5 N1 Pd1 . . 114.5(2) ? C1 N1 Pd1 . . 122.9(2) ? C7 N2 C6 . . 118.8(3) ? C7 N2 Pd1 . . 127.7(2) ? C6 N2 Pd1 . . 113.4(2) ? N1 C1 C2 . . 113.7(3) ? N1 C1 H1A . . 108.8 ? C2 C1 H1A . . 108.8 ? N1 C1 H1B . . 108.8 ? C2 C1 H1B . . 108.8 ? H1A C1 H1B . . 107.7 ? C4 C2 C1 . . 112.3(3) ? C4 C2 C3 . . 110.4(3) ? C1 C2 C3 . . 107.9(3) ? C4 C2 H2 . . 108.7 ? C1 C2 H2 . . 108.7 ? C3 C2 H2 . . 108.7 ? C2 C3 H3A . . 109.5 ? C2 C3 H3B . . 109.5 ? H3A C3 H3B . . 109.5 ? C2 C3 H3C . . 109.5 ? H3A C3 H3C . . 109.5 ? H3B C3 H3C . . 109.5 ? C2 C4 H4A . . 109.5 ? C2 C4 H4B . . 109.5 ? H4A C4 H4B . . 109.5 ? C2 C4 H4C . . 109.5 ? H4A C4 H4C . . 109.5 ? H4B C4 H4C . . 109.5 ? N1 C5 C6 . . 117.1(3) ? N1 C5 C11 . . 123.5(3) ? C6 C5 C11 . . 119.3(3) ? N2 C6 C10 . . 121.3(3) ? N2 C6 C5 . . 114.5(3) ? C10 C6 C5 . . 124.2(3) ? N2 C7 C8 . . 121.8(3) ? N2 C7 H7 . . 119.1 ? C8 C7 H7 . . 119.1 ? C9 C8 C7 . . 120.3(4) ? C9 C8 H8 . . 119.9 ? C7 C8 H8 . . 119.9 ? C8 C9 C10 . . 117.9(4) ? C8 C9 H9 . . 121.0 ? C10 C9 H9 . . 121.0 ? C6 C10 C9 . . 119.9(3) ? C6 C10 H10 . . 120.1 ? C9 C10 H10 . . 120.1 ? C12 C11 C16 . . 119.5(3) ? C12 C11 C5 . . 118.2(3) ? C16 C11 C5 . . 122.3(3) ? C13 C12 C11 . . 119.2(3) ? C13 C12 H12 . . 120.4 ? C11 C12 H12 . . 120.4 ? C14 C13 C12 . . 120.9(3) ? C14 C13 H13 . . 119.6 ? C12 C13 H13 . . 119.6 ? C15 C14 C13 . . 119.4(3) ? C15 C14 H14 . . 120.3 ? C13 C14 H14 . . 120.3 ? C14 C15 C16 . . 121.2(4) ? C14 C15 H15 . . 119.4 ? C16 C15 H15 . . 119.4 ? C15 C16 C11 . . 119.8(3) ? C15 C16 H16 . . 120.1 ? C11 C16 H16 . . 120.1 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Pd1 N2 . 2.036(3) ? Pd1 N1 . 2.040(3) ? Pd1 Cl1 . 2.2944(10) ? Pd1 Cl2 . 2.3054(10) ? N1 C5 . 1.296(4) ? N1 C1 . 1.466(4) ? N2 C7 . 1.328(4) ? N2 C6 . 1.361(4) ? C1 C2 . 1.529(4) ? C1 H1A . 0.9700 ? C1 H1B . 0.9700 ? C2 C4 . 1.524(5) ? C2 C3 . 1.536(5) ? C2 H2 . 0.9800 ? C3 H3A . 0.9600 ? C3 H3B . 0.9600 ? C3 H3C . 0.9600 ? C4 H4A . 0.9600 ? C4 H4B . 0.9600 ? C4 H4C . 0.9600 ? C5 C6 . 1.472(5) ? C5 C11 . 1.499(4) ? C6 C10 . 1.377(5) ? C7 C8 . 1.378(6) ? C7 H7 . 0.9300 ? C8 C9 . 1.374(6) ? C8 H8 . 0.9300 ? C9 C10 . 1.381(5) ? C9 H9 . 0.9300 ? C10 H10 . 0.9300 ? C11 C12 . 1.397(4) ? C11 C16 . 1.394(5) ? C12 C13 . 1.391(5) ? C12 H12 . 0.9300 ? C13 C14 . 1.384(6) ? C13 H13 . 0.9300 ? C14 C15 . 1.369(6) ? C14 H14 . 0.9300 ? C15 C16 . 1.381(5) ? C15 H15 . 0.9300 ? C16 H16 . 0.9300 ?