#------------------------------------------------------------------------------ #$Date: 2022-11-24 07:15:13 +0000 (Thu, 24 Nov 2022) $ #$Revision: 279524 $ #$URL: svn://www.crystallography.net/cod/cif/3/00/01/3000196.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_3000196 loop_ _publ_author_name 'Jos\'e Manuel M\'endez-Arriaga' 'Erika Rubio-Mirallas' 'Miguel Quir\'os' 'Manuel S\'anchez-Moreno' _publ_section_title ; Zinc 1,2,4-triazolo[1,5-a]pyrimidine Complexes: Synthesis, Structural Characterization and their Effect Against Chagas Disease. ; _journal_issue 4 _journal_name_full 'Medicinal chemistry (Shariqah (United Arab Emirates))' _journal_page_first 444 _journal_page_last 451 _journal_paper_doi 10.2174/1573406417666210812162500 _journal_volume 18 _journal_year 2022 _chemical_formula_moiety 'C5 H15 N5 O5 Zn 2+, C5 H5 N5, O4 S 2-' _chemical_formula_sum 'C10 H20 N10 O9 S Zn' _chemical_formula_weight 521.79 _space_group_crystal_system monoclinic _space_group_IT_number 14 _space_group_name_Hall '-P 2ybc' _space_group_name_H-M_alt 'P 1 21/c 1' _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-2014/7 _cell_angle_alpha 90 _cell_angle_beta 91.352(2) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 7.5409(3) _cell_length_b 21.4401(8) _cell_length_c 11.7364(5) _cell_measurement_reflns_used 9967 _cell_measurement_temperature 150(2) _cell_measurement_theta_max 28.72 _cell_measurement_theta_min 2.57 _cell_volume 1896.99(13) _computing_cell_refinement 'Bruker SAINT' _computing_data_collection 'Bruker APEX2' _computing_data_reduction 'Bruker SAINT' _computing_publication_material 'SHELXL-2014/7 (Sheldrick, 2014)' _computing_structure_refinement 'SHELXL-2014/7 (Sheldrick, 2014)' _computing_structure_solution 'SHELXS-97 (Sheldrick 2008)' _diffrn_ambient_temperature 150(2) _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.993 _diffrn_measurement_device_type 'Bruker APEX-II CCD' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0253 _diffrn_reflns_av_unetI/netI 0.0244 _diffrn_reflns_Laue_measured_fraction_full 0.998 _diffrn_reflns_Laue_measured_fraction_max 0.993 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 28 _diffrn_reflns_limit_k_min -28 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 17533 _diffrn_reflns_point_group_measured_fraction_full 0.998 _diffrn_reflns_point_group_measured_fraction_max 0.993 _diffrn_reflns_theta_full 25.242 _diffrn_reflns_theta_max 28.760 _diffrn_reflns_theta_min 2.574 _exptl_absorpt_coefficient_mu 1.478 _exptl_absorpt_correction_T_max 0.7458 _exptl_absorpt_correction_T_min 0.6415 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SADABS-2014/3 (Bruker 2014)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.827 _exptl_crystal_description prismatic _exptl_crystal_F_000 1072 _exptl_crystal_size_max 0.180 _exptl_crystal_size_mid 0.120 _exptl_crystal_size_min 0.120 _refine_diff_density_max 0.301 _refine_diff_density_min -0.712 _refine_diff_density_rms 0.083 _refine_ls_extinction_coef . _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.892 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 310 _refine_ls_number_reflns 4886 _refine_ls_number_restraints 10 _refine_ls_restrained_S_all 0.892 _refine_ls_R_factor_all 0.0357 _refine_ls_R_factor_gt 0.0294 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.1000P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1014 _refine_ls_wR_factor_ref 0.1078 _reflns_Friedel_coverage 0.000 _reflns_Friedel_fraction_full . _reflns_Friedel_fraction_max . _reflns_number_gt 4340 _reflns_number_total 4886 _reflns_threshold_expression 'I > 2\s(I)' _cod_data_source_file zn7atpso4_x.cif _cod_data_source_block zn7atpso4 _cod_original_cell_volume 1896.98(13) _cod_database_code 3000196 _cod_database_fobs_code 3000196 _shelx_shelxl_version_number 2014/7 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_estimated_absorpt_t_min 0.777 _shelx_estimated_absorpt_t_max 0.843 loop_ _space_group_symop_operation_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp _atom_site_refinement_flags_occupancy _atom_site_disorder_assembly _atom_site_disorder_group Zn Zn 0.20011(3) 0.30670(2) 0.60110(2) 0.01017(9) Uani 1 1 d . . . . . N1A N 0.5115(2) 0.45909(7) 0.73099(13) 0.0141(3) Uani 1 1 d . . . . . C2A C 0.4659(2) 0.40035(8) 0.71148(15) 0.0136(3) Uani 1 1 d . . . . . H2A H 0.5125 0.3671 0.7564 0.016 Uiso 1 1 d R U . . . N3A N 0.34964(19) 0.39060(6) 0.62376(13) 0.0119(3) Uani 1 1 d . . . . . C3AA C 0.3182(2) 0.44806(7) 0.58238(15) 0.0110(3) Uani 1 1 d . . . . . N4A N 0.2131(2) 0.46472(7) 0.49446(13) 0.0139(3) Uani 1 1 d . . . . . C5A C 0.2069(2) 0.52703(8) 0.47689(16) 0.0151(3) Uani 1 1 d . . . . . H5A H 0.1348 0.5415 0.4149 0.018 Uiso 1 1 d R U . . . C6A C 0.2961(2) 0.57158(8) 0.54204(15) 0.0148(3) Uani 1 1 d . . . . . H6A H 0.2821 0.6146 0.5248 0.018 Uiso 1 1 d R U . . . C7A C 0.4062(2) 0.55296(8) 0.63338(15) 0.0127(3) Uani 1 1 d . . . . . N7A N 0.4996(2) 0.58858(7) 0.70457(14) 0.0168(3) Uani 1 1 d . . . . . H71A H 0.5647 0.5714 0.7593 0.020 Uiso 1 1 d R U . . . H72A H 0.4966 0.6294 0.6972 0.020 Uiso 1 1 d R U . . . N8A N 0.41471(19) 0.48962(6) 0.64767(12) 0.0119(3) Uani 1 1 d . . . . . N1B N 0.6847(2) 0.55452(7) 0.93711(14) 0.0162(3) Uani 1 1 d . . . . . C2B C 0.7072(3) 0.61199(8) 0.97700(16) 0.0171(4) Uani 1 1 d . . . . . H2B H 0.6641 0.6472 0.9358 0.021 Uiso 1 1 d R U . . . N3B N 0.7951(2) 0.61824(7) 1.07850(14) 0.0174(3) Uani 1 1 d . . . . . C3AB C 0.8337(2) 0.55911(8) 1.10676(15) 0.0137(3) Uani 1 1 d . . . . . N4B N 0.9222(2) 0.53830(7) 1.19958(14) 0.0171(3) Uani 1 1 d . . . . . C5B C 0.9393(3) 0.47579(9) 1.20405(16) 0.0182(4) Uani 1 1 d . . . . . H5B H 1.0004 0.4589 1.2686 0.022 Uiso 1 1 d R U . . . C6B C 0.8752(3) 0.43405(8) 1.12342(16) 0.0171(4) Uani 1 1 d . . . . . H6B H 0.8912 0.3905 1.1340 0.021 Uiso 1 1 d R U . . . C7B C 0.7857(2) 0.45648(8) 1.02571(16) 0.0140(3) Uani 1 1 d . . . . . N7B N 0.7190(2) 0.42381(7) 0.93882(14) 0.0177(3) Uani 1 1 d . . . . . H71B H 0.6647 0.4431 0.8817 0.021 Uiso 1 1 d R U . . . H72B H 0.7289 0.3829 0.9383 0.021 Uiso 1 1 d R U . . . N8B N 0.7676(2) 0.52031(7) 1.02247(13) 0.0130(3) Uani 1 1 d . . . . . O1W O 0.03550(17) 0.22881(6) 0.58749(11) 0.0139(3) Uani 1 1 d D . . . . H11W H -0.015(3) 0.2240(11) 0.6482(12) 0.017 Uiso 1 1 d D U . . . H12W H -0.041(2) 0.2305(11) 0.5361(15) 0.017 Uiso 1 1 d D U . . . O2W O 0.24393(17) 0.28013(6) 0.77221(11) 0.0137(3) Uani 1 1 d D . . . . H21W H 0.326(2) 0.2603(9) 0.7991(19) 0.016 Uiso 1 1 d D U . . . H22W H 0.233(3) 0.3095(8) 0.8164(16) 0.016 Uiso 1 1 d D U . . . O3W O -0.02179(17) 0.35841(6) 0.65808(11) 0.0139(3) Uani 1 1 d D . . . . H31W H -0.009(3) 0.3863(8) 0.7040(16) 0.017 Uiso 1 1 d D U . . . H32W H -0.112(2) 0.3410(10) 0.6785(19) 0.017 Uiso 1 1 d D U . . . O4W O 0.42941(18) 0.25630(6) 0.56219(11) 0.0134(3) Uani 1 1 d D . . . . H41W H 0.471(3) 0.2657(10) 0.5003(12) 0.016 Uiso 1 1 d D U . . . H42W H 0.514(2) 0.2645(10) 0.6051(17) 0.016 Uiso 1 1 d D U . . . O5W O 0.15104(18) 0.33453(6) 0.43170(11) 0.0155(3) Uani 1 1 d D . . . . H51W H 0.063(2) 0.3217(10) 0.3951(19) 0.019 Uiso 1 1 d D U . . . H52W H 0.152(3) 0.3722(5) 0.429(2) 0.019 Uiso 1 1 d D U . . . S S 0.72772(5) 0.24702(2) 0.82166(4) 0.00989(11) Uani 1 1 d . . . . . O1P O 0.86171(18) 0.19853(6) 0.80060(12) 0.0162(3) Uani 1 1 d . . . . . O2P O 0.78409(18) 0.28808(6) 0.91654(11) 0.0168(3) Uani 1 1 d . . . . . O3P O 0.70035(17) 0.28479(6) 0.71659(11) 0.0155(3) Uani 1 1 d . . . . . O4P O 0.55561(16) 0.21712(6) 0.84902(11) 0.0140(3) Uani 1 1 d . . . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Zn 0.01036(13) 0.00828(13) 0.01177(13) -0.00037(6) -0.00151(8) -0.00077(6) N1A 0.0151(7) 0.0109(6) 0.0159(7) 0.0018(5) -0.0051(6) 0.0000(5) C2A 0.0138(8) 0.0092(7) 0.0177(9) 0.0007(6) -0.0026(6) 0.0006(6) N3A 0.0114(7) 0.0085(6) 0.0156(7) 0.0009(5) -0.0018(5) -0.0002(5) C3AA 0.0095(7) 0.0105(7) 0.0131(8) -0.0007(6) 0.0016(6) -0.0014(6) N4A 0.0126(7) 0.0126(7) 0.0165(7) 0.0024(5) -0.0023(6) 0.0007(6) C5A 0.0130(8) 0.0144(8) 0.0178(9) 0.0032(6) 0.0002(7) 0.0012(6) C6A 0.0161(8) 0.0095(7) 0.0188(9) 0.0041(6) 0.0010(7) 0.0027(6) C7A 0.0123(8) 0.0089(7) 0.0170(8) -0.0001(6) 0.0029(6) 0.0004(6) N7A 0.0214(8) 0.0078(6) 0.0209(8) -0.0009(6) -0.0035(6) -0.0012(6) N8A 0.0129(7) 0.0087(6) 0.0141(7) 0.0003(5) -0.0013(5) 0.0003(5) N1B 0.0182(8) 0.0138(7) 0.0165(8) 0.0008(6) -0.0039(6) 0.0028(6) C2B 0.0214(9) 0.0115(8) 0.0184(9) -0.0005(6) -0.0004(7) 0.0016(7) N3B 0.0224(8) 0.0119(7) 0.0179(8) -0.0020(6) 0.0011(6) 0.0012(6) C3AB 0.0144(8) 0.0123(8) 0.0144(8) -0.0027(6) 0.0020(6) -0.0028(6) N4B 0.0208(8) 0.0147(7) 0.0156(8) -0.0029(6) -0.0002(6) 0.0000(6) C5B 0.0208(9) 0.0177(8) 0.0158(9) 0.0013(7) -0.0017(7) 0.0021(7) C6B 0.0196(9) 0.0118(8) 0.0199(9) 0.0015(7) -0.0002(7) 0.0012(7) C7B 0.0134(8) 0.0104(7) 0.0184(9) -0.0006(6) 0.0043(7) -0.0008(6) N7B 0.0225(8) 0.0104(7) 0.0199(8) -0.0034(6) -0.0056(6) 0.0009(6) N8B 0.0152(7) 0.0100(7) 0.0138(7) -0.0010(5) -0.0001(6) 0.0002(5) O1W 0.0135(6) 0.0138(6) 0.0144(6) -0.0009(5) -0.0004(5) -0.0032(5) O2W 0.0172(6) 0.0118(6) 0.0120(6) -0.0003(4) -0.0020(5) 0.0041(5) O3W 0.0123(6) 0.0109(6) 0.0186(7) -0.0012(5) 0.0012(5) -0.0003(5) O4W 0.0120(6) 0.0160(6) 0.0123(6) -0.0003(5) -0.0007(5) 0.0006(5) O5W 0.0185(6) 0.0133(6) 0.0144(6) -0.0006(5) -0.0045(5) -0.0035(5) S 0.0095(2) 0.00867(19) 0.0114(2) 0.00067(13) -0.00150(15) 0.00010(14) O1P 0.0131(6) 0.0157(6) 0.0198(7) -0.0008(5) -0.0018(5) 0.0048(5) O2P 0.0201(7) 0.0133(6) 0.0168(6) -0.0035(5) -0.0046(5) -0.0006(5) O3P 0.0135(6) 0.0181(6) 0.0148(6) 0.0066(5) -0.0027(5) -0.0011(5) O4P 0.0135(6) 0.0109(6) 0.0175(6) 0.0011(4) 0.0020(5) -0.0010(5) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Zn Zn 0.2839 1.4301 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 O1W Zn O4W 93.61(5) . . O1W Zn O5W 93.66(5) . . O4W Zn O5W 93.90(5) . . O1W Zn O2W 86.34(5) . . O4W Zn O2W 87.52(5) . . O5W Zn O2W 178.58(5) . . O1W Zn O3W 88.30(5) . . O4W Zn O3W 174.09(5) . . O5W Zn O3W 91.56(5) . . O2W Zn O3W 87.03(5) . . O1W Zn N3A 174.66(5) . . O4W Zn N3A 91.46(5) . . O5W Zn N3A 87.66(5) . . O2W Zn N3A 92.21(5) . . O3W Zn N3A 86.49(5) . . C2A N1A N8A 101.47(13) . . N1A C2A N3A 116.08(15) . . N1A C2A H2A 121.8 . . N3A C2A H2A 122.1 . . C3AA N3A C2A 103.82(14) . . C3AA N3A Zn 129.74(11) . . C2A N3A Zn 123.75(11) . . N4A C3AA N3A 128.40(15) . . N4A C3AA N8A 123.72(15) . . N3A C3AA N8A 107.88(14) . . C3AA N4A C5A 113.57(15) . . N4A C5A C6A 125.55(16) . . N4A C5A H5A 117.2 . . C6A C5A H5A 117.3 . . C5A C6A C7A 119.82(16) . . C5A C6A H6A 120.1 . . C7A C6A H6A 120.1 . . N7A C7A N8A 118.20(16) . . N7A C7A C6A 128.09(16) . . N8A C7A C6A 113.71(15) . . C7A N7A H71A 120.0 . . C7A N7A H72A 120.0 . . H71A N7A H72A 120.0 . . C7A N8A N1A 125.64(14) . . C7A N8A C3AA 123.55(15) . . N1A N8A C3AA 110.73(14) . . C2B N1B N8B 100.69(14) . . N1B C2B N3B 117.21(16) . . N1B C2B H2B 121.3 . . N3B C2B H2B 121.5 . . C3AB N3B C2B 102.86(15) . . N4B C3AB N3B 128.08(16) . . N4B C3AB N8B 123.21(15) . . N3B C3AB N8B 108.71(15) . . C3AB N4B C5B 114.07(15) . . N4B C5B C6B 125.90(17) . . N4B C5B H5B 117.1 . . C6B C5B H5B 117.0 . . C5B C6B C7B 119.46(16) . . C5B C6B H6B 120.4 . . C7B C6B H6B 120.1 . . N7B C7B N8B 117.93(16) . . N7B C7B C6B 127.90(16) . . N8B C7B C6B 114.17(15) . . C7B N7B H71B 120.0 . . C7B N7B H72B 120.0 . . H71B N7B H72B 120.0 . . C7B N8B C3AB 123.17(15) . . C7B N8B N1B 126.30(14) . . C3AB N8B N1B 110.53(14) . . Zn O1W H11W 108.7(16) . . Zn O1W H12W 115.2(16) . . H11W O1W H12W 108(2) . . Zn O2W H21W 127.9(18) . . Zn O2W H22W 112.2(16) . . H21W O2W H22W 104(2) . . Zn O3W H31W 121.0(17) . . Zn O3W H32W 121.4(17) . . H31W O3W H32W 103(2) . . Zn O4W H41W 113.5(16) . . Zn O4W H42W 113.0(17) . . H41W O4W H42W 100(2) . . Zn O5W H51W 121.2(17) . . Zn O5W H52W 109.0(17) . . H51W O5W H52W 108(2) . . O2P S O1P 111.17(8) . . O2P S O3P 109.47(8) . . O1P S O3P 109.11(8) . . O2P S O4P 109.35(8) . . O1P S O4P 109.68(7) . . O3P S O4P 107.99(7) . . loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 Zn O1W 2.0846(13) . Zn O4W 2.0984(13) . Zn O5W 2.1003(13) . Zn O2W 2.1059(13) . Zn O3W 2.1282(13) . Zn N3A 2.1364(14) . N1A C2A 1.324(2) . N1A N8A 1.3726(19) . C2A N3A 1.353(2) . C2A H2A 0.9500 . N3A C3AA 1.343(2) . C3AA N4A 1.335(2) . C3AA N8A 1.373(2) . N4A C5A 1.353(2) . C5A C6A 1.388(3) . C5A H5A 0.9500 . C6A C7A 1.399(2) . C6A H6A 0.9500 . C7A N7A 1.323(2) . C7A N8A 1.370(2) . N7A H71A 0.8800 . N7A H72A 0.8800 . N1B C2B 1.327(2) . N1B N8B 1.380(2) . C2B N3B 1.356(2) . C2B H2B 0.9500 . N3B C3AB 1.341(2) . C3AB N4B 1.340(2) . C3AB N8B 1.377(2) . N4B C5B 1.347(2) . C5B C6B 1.381(3) . C5B H5B 0.9500 . C6B C7B 1.402(3) . C6B H6B 0.9500 . C7B N7B 1.327(2) . C7B N8B 1.376(2) . N7B H71B 0.8800 . N7B H72B 0.8800 . O1W H11W 0.823(10) . O1W H12W 0.826(10) . O2W H21W 0.810(10) . O2W H22W 0.822(10) . O3W H31W 0.808(9) . O3W H32W 0.816(10) . O4W H41W 0.823(10) . O4W H42W 0.824(10) . O5W H51W 0.828(10) . O5W H52W 0.807(10) . S O2P 1.4744(13) . S O1P 1.4746(13) . S O3P 1.4856(13) . S O4P 1.4893(13) . loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A N7A H71A N1B 0.88 2.28 3.123(2) 159.4 . N7A H72A O4P 0.88 1.99 2.8550(18) 165.8 2_656 N7B H71B N1A 0.88 2.12 2.965(2) 161.3 . N7B H72B O2P 0.88 2.09 2.964(2) 170.5 . O1W H11W O1P 0.823(10) 2.106(10) 2.924(2) 172(2) 1_455 O1W H12W O2P 0.826(10) 1.943(11) 2.7515(18) 166(2) 4_465 O2W H21W O4P 0.810(10) 2.036(10) 2.8394(18) 171(2) . O2W H22W N3B 0.822(10) 1.994(10) 2.816(2) 179(2) 3_667 O3W H31W N4B 0.808(9) 2.072(11) 2.8634(19) 166(2) 3_667 O3W H32W O3P 0.816(10) 1.920(11) 2.7243(18) 168(2) 1_455 O4W H41W O4P 0.823(10) 1.936(10) 2.7572(19) 175(2) 4_565 O4W H42W O3P 0.824(10) 1.945(10) 2.7670(18) 175(2) . O5W H51W O1P 0.828(10) 1.910(10) 2.7335(18) 173(2) 4_465 O5W H52W N4A 0.807(10) 2.175(13) 2.9217(19) 154(2) .