#------------------------------------------------------------------------------ #$Date: 2025-08-19 20:30:04 +0100 (Tue, 19 Aug 2025) $ #$Revision: 301811 $ #$URL: svn://www.crystallography.net/cod/cif/4/00/00/4000068.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4000068 loop_ _publ_author_name 'Pivovar, Adam M.' 'Holman, K. Travis' 'Ward, Michael D.' _publ_section_title ; Shape-Selective Separation of Molecular Isomers with Tunable Hydrogen-Bonded Host Frameworks ; _journal_issue 9 _journal_name_full 'Chemistry of Materials' _journal_page_first 3018 _journal_paper_doi 10.1021/cm0104452 _journal_volume 13 _journal_year 2001 _chemical_compound_source 'J. Swift, Prof. M. Ward' _chemical_formula_sum 'C26 H32 N6 O6 S2' _chemical_formula_weight 588.70 _chemical_name_common 98296 _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL _cell_angle_alpha 90.319(1) _cell_angle_beta 97.553(1) _cell_angle_gamma 118.995(1) _cell_formula_units_Z 1 _cell_length_a 7.3080(4) _cell_length_b 7.4666(5) _cell_length_c 15.0563(9) _cell_measurement_reflns_used 2827 _cell_measurement_temperature 173(2) _cell_volume 710.08(8) _computing_cell_refinement 'SMART, Siemens' _computing_data_collection 'SMART, Siemens' _computing_data_reduction 'SAINT, Siemens' _computing_molecular_graphics 'SHELXTL, Siemens' _computing_structure_refinement 'SHELXL-93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS-86 (Sheldrick, 1990)' _diffrn_ambient_temperature 173(2) _diffrn_measurement_device 'SMART platform CCD, Bruker (or Siemens)' _diffrn_measurement_method 'omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'normal-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0369 _diffrn_reflns_av_sigmaI/netI 0.0671 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 5 _diffrn_reflns_limit_k_min -8 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 4208 _diffrn_reflns_theta_max 25.08 _diffrn_reflns_theta_min 1.37 _exptl_absorpt_coefficient_mu 0.239 _exptl_absorpt_correction_T_max 1.000000 _exptl_absorpt_correction_T_min 0.536914 _exptl_absorpt_correction_type 'simulated psi scans (SADABS)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.377 _exptl_crystal_description 'hexagonal plate' _exptl_crystal_F_000 310 _exptl_crystal_size_max 0.9 _exptl_crystal_size_mid 0.3 _exptl_crystal_size_min 0.3 _refine_diff_density_max 0.966 _refine_diff_density_min -0.996 _refine_diff_density_rms 0.120 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 1.001 _refine_ls_goodness_of_fit_obs 1.043 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 252 _refine_ls_number_reflns 2446 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.027 _refine_ls_restrained_S_obs 1.043 _refine_ls_R_factor_all 0.0842 _refine_ls_R_factor_obs 0.0681 _refine_ls_shift/esd_max 0.001 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.1360P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.1938 _refine_ls_wR_factor_obs 0.1692 _reflns_number_observed 1859 _reflns_number_total 2447 _reflns_observed_criterion >2sigma(I) _cod_data_source_file cm0104452.cif _cod_data_source_block 98296 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 2827 2014-09-09 07:05:25Z andrius The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'calc w=1/[\s^2^(Fo^2^)+(0.1360P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w=1/[\s^2^(Fo^2^)+(0.1360P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_original_cell_volume 710.08(7) _cod_original_sg_symbol_H-M P-1 _cod_database_code 4000068 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1 0.0261(5) 0.0311(5) 0.0151(4) 0.0026(3) 0.0021(3) 0.0109(4) O1 0.0302(12) 0.0286(13) 0.0236(12) 0.0064(10) 0.0046(9) 0.0109(11) O2 0.0293(12) 0.0387(14) 0.0214(12) 0.0024(10) 0.0028(9) 0.0155(11) O3 0.0248(12) 0.0334(14) 0.0207(12) 0.0014(9) 0.0016(9) 0.0103(10) C1 0.027(2) 0.026(2) 0.016(2) 0.0032(12) 0.0001(12) 0.0097(14) C2 0.045(2) 0.088(3) 0.020(2) 0.001(2) 0.000(2) 0.043(2) C3 0.047(2) 0.082(3) 0.018(2) -0.002(2) 0.002(2) 0.041(2) C4 0.027(2) 0.023(2) 0.021(2) 0.0042(13) 0.0027(13) 0.0086(14) C5 0.033(2) 0.103(4) 0.018(2) 0.006(2) 0.0004(15) 0.036(2) C6 0.038(2) 0.090(3) 0.020(2) 0.006(2) 0.006(2) 0.036(2) N1 0.030(2) 0.030(2) 0.038(2) 0.0025(13) 0.0033(12) 0.0112(15) N2 0.028(2) 0.036(2) 0.029(2) 0.0013(12) 0.0036(12) 0.0122(14) N3 0.0248(15) 0.038(2) 0.030(2) 0.0068(13) 0.0057(12) 0.0148(14) C7 0.030(2) 0.034(2) 0.0111(15) -0.0001(13) 0.0004(12) 0.013(2) C8 0.031(5) 0.037(2) 0.040(3) 0.004(2) 0.009(4) 0.015(3) C9 0.027(9) 0.035(6) 0.054(8) -0.003(4) 0.008(8) 0.011(8) C10 0.032(4) 0.030(4) 0.029(4) 0.003(3) 0.008(3) 0.004(3) C11 0.036(4) 0.029(4) 0.029(4) 0.004(3) 0.008(3) 0.009(3) C12 0.032(4) 0.026(4) 0.029(4) -0.001(3) 0.004(3) 0.010(3) C13 0.049(5) 0.059(6) 0.028(4) 0.007(4) 0.005(3) 0.028(5) C8D 0.031(5) 0.037(2) 0.040(3) 0.004(2) 0.009(4) 0.015(3) C9D 0.025(8) 0.040(6) 0.036(7) -0.001(4) 0.000(7) 0.011(7) C10D 0.050(5) 0.046(5) 0.031(5) -0.001(4) 0.007(4) 0.023(4) C11D 0.038(4) 0.028(4) 0.034(4) 0.004(3) 0.002(3) 0.013(3) C12D 0.035(4) 0.025(4) 0.036(4) 0.005(3) 0.009(3) 0.015(3) C13D 0.051(6) 0.064(7) 0.034(5) 0.008(4) 0.008(4) 0.026(5) loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_occupancy _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_group S1 S 0.34752(12) -0.08203(13) 0.14266(5) 0.0256(3) Uani 1 d . . O1 O 0.4415(3) 0.1260(3) 0.11307(15) 0.0289(6) Uani 1 d . . O2 O 0.4477(4) -0.1959(4) 0.11484(14) 0.0305(6) Uani 1 d . . O3 O 0.1178(3) -0.1933(4) 0.11920(14) 0.0282(6) Uani 1 d . . C1 C 0.3987(5) -0.0552(5) 0.2617(2) 0.0247(7) Uani 1 d . . C2 C 0.2584(6) -0.0405(7) 0.3099(2) 0.0471(11) Uani 1 d . . H2 H 0.1336(6) -0.0453(7) 0.2794(2) 0.083(17) Uiso 1 calc R . C3 C 0.2995(6) -0.0186(7) 0.4033(2) 0.0454(11) Uani 1 d . . H3 H 0.2010(6) -0.0094(7) 0.4358(2) 0.070(15) Uiso 1 calc R . C4 C 0.4802(5) -0.0099(5) 0.4500(2) 0.0253(7) Uani 1 d . . C5 C 0.6216(6) -0.0171(8) 0.4001(3) 0.0506(12) Uani 1 d . . H5 H 0.7499(6) -0.0057(8) 0.4303(3) 0.085(17) Uiso 1 calc R . C6 C 0.5823(6) -0.0406(7) 0.3068(2) 0.0472(11) Uani 1 d . . H6 H 0.6822(6) -0.0466(7) 0.2742(2) 0.087(17) Uiso 1 calc R . N1 N 0.7950(4) 0.6486(5) 0.9073(2) 0.0345(7) Uani 1 d . . H1NA H 0.7240(4) 0.7159(5) 0.9071(2) 0.053(13) Uiso 1 calc R . H1NB H 0.7286(4) 0.5140(5) 0.9082(2) 0.040(11) Uiso 1 calc R . N2 N 1.1071(5) 0.6477(5) 0.9065(2) 0.0328(7) Uani 1 d . . H2NA H 1.2445(5) 0.7140(5) 0.9057(2) 0.018(8) Uiso 1 calc R . H2NB H 1.0398(5) 0.5131(5) 0.9074(2) 0.044(12) Uiso 1 calc R . N3 N 1.1006(4) 0.9517(4) 0.9050(2) 0.0310(7) Uani 1 d . . H3NA H 1.2379(4) 1.0195(4) 0.9042(2) 0.031(10) Uiso 1 calc R . H3NB H 1.0290(4) 1.0184(4) 0.9049(2) 0.040(11) Uiso 1 calc R . C7 C 1.0019(5) 0.7499(5) 0.9063(2) 0.0269(8) Uani 1 d . . C8 C 0.2074(80) 0.4278(86) 0.4997(40) 0.036(2) Uani 0.506(6) d P 1 H8 H 0.2973(80) 0.3983(86) 0.5411(40) 0.040(22) Uiso 0.506(6) calc PR 1 C9 C 0.2161(24) 0.4172(34) 0.4043(15) 0.040(4) Uani 0.506(6) d P 1 H9 H 0.3131(24) 0.3843(34) 0.3823(15) 0.031(23) Uiso 0.506(6) calc PR 1 C10 C 0.0763(11) 0.4570(11) 0.3455(5) 0.035(2) Uani 0.506(6) d P 1 H10 H 0.0809(11) 0.4503(11) 0.2828(5) 0.109(42) Uiso 0.506(6) calc PR 1 C11 C -0.0651(11) 0.5046(11) 0.3739(5) 0.034(2) Uani 0.506(6) d P 1 C12 C -0.0696(11) 0.5195(11) 0.4697(5) 0.031(2) Uani 0.506(6) d P 1 C13 C -0.2139(15) 0.5420(15) 0.3088(5) 0.045(2) Uani 0.506(6) d P 1 H13A H -0.2074(15) 0.6709(15) 0.3279(5) 0.090(82) Uiso 0.506(6) calc PR 1 H13B H -0.3585(15) 0.4284(15) 0.3072(5) 0.192(127) Uiso 0.506(6) calc PR 1 H13C H -0.1735(15) 0.5511(15) 0.2488(5) 0.055(25) Uiso 0.506(6) calc PR 1 C8D C 0.2211(82) 0.4272(88) 0.4969(41) 0.036(2) Uani 0.494(6) d P 2 H8D H 0.1247(82) 0.3982(88) 0.5384(41) 0.027(20) Uiso 0.494(6) calc PR 2 C9D C 0.1471(24) 0.4127(34) 0.4094(15) 0.036(4) Uani 0.494(6) d P 2 H9D H 0.0036(24) 0.3765(34) 0.3898(15) 0.053(27) Uiso 0.494(6) calc PR 2 C10D C 0.2881(14) 0.4526(13) 0.3474(6) 0.042(2) Uani 0.494(6) d P 2 H10D H 0.2378(14) 0.4431(13) 0.2851(6) 0.057(27) Uiso 0.494(6) calc PR 2 C11D C 0.4952(12) 0.5048(11) 0.3740(5) 0.035(2) Uani 0.494(6) d P 2 C12D C 0.5695(12) 0.5179(11) 0.4684(5) 0.032(2) Uani 0.494(6) d P 2 C13D C 0.6371(15) 0.5391(18) 0.3062(6) 0.051(2) Uani 0.494(6) d P 2 H13D H 0.6642(15) 0.4232(18) 0.3022(6) 0.033(30) Uiso 0.494(6) calc PR 2 H13E H 0.7714(15) 0.6661(18) 0.3242(6) 0.037(47) Uiso 0.494(6) calc PR 2 H13F H 0.5695(15) 0.5507(18) 0.2475(6) 0.086(34) Uiso 0.494(6) calc PR 2 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 O2 S1 O3 113.18(14) . . O2 S1 O1 112.62(14) . . O3 S1 O1 112.37(13) . . O2 S1 C1 105.92(14) . . O3 S1 C1 105.56(14) . . O1 S1 C1 106.46(14) . . C6 C1 C2 119.3(3) . . C6 C1 S1 120.6(3) . . C2 C1 S1 120.1(3) . . C1 C2 C3 119.9(3) . . C1 C2 H2 120.0(2) . . C3 C2 H2 120.0(2) . . C4 C3 C2 121.6(4) . . C4 C3 H3 119.2(2) . . C2 C3 H3 119.2(2) . . C5 C4 C3 117.2(3) . . C5 C4 C4 121.9(4) . 2_656 C3 C4 C4 121.0(4) . 2_656 C4 C5 C6 121.9(3) . . C4 C5 H5 119.0(2) . . C6 C5 H5 119.0(2) . . C1 C6 C5 120.0(3) . . C1 C6 H6 120.0(2) . . C5 C6 H6 120.0(2) . . C7 N1 H1NA 120.0(2) . . C7 N1 H1NB 120.0(2) . . H1NA N1 H1NB 120.0 . . C7 N2 H2NA 120.0(2) . . C7 N2 H2NB 120.0(2) . . H2NA N2 H2NB 120.0 . . C7 N3 H3NA 120.0(2) . . C7 N3 H3NB 120.0(2) . . H3NA N3 H3NB 120.0 . . N3 C7 N2 120.7(3) . . N3 C7 N1 119.7(3) . . N2 C7 N1 119.6(3) . . C12 C8 C9 120.1(40) 2_566 . C12 C8 H8 119.9(25) 2_566 . C9 C8 H8 119.9(22) . . C10 C9 C8 117.9(24) . . C10 C9 H9 121.1(8) . . C8 C9 H9 121.1(22) . . C11 C10 C9 123.2(10) . . C11 C10 H10 118.4(4) . . C9 C10 H10 118.4(8) . . C10 C11 C12 118.6(7) . . C10 C11 C13 121.5(7) . . C12 C11 C13 119.9(7) . . C8 C12 C12 120.8(25) 2_566 2_566 C8 C12 C11 119.8(26) 2_566 . C12 C12 C11 119.3(8) 2_566 . C11 C13 H13A 109.5(5) . . C11 C13 H13B 109.5(4) . . H13A C13 H13B 109.5 . . C11 C13 H13C 109.5(4) . . H13A C13 H13C 109.5 . . H13B C13 H13C 109.5 . . C9D C8D C12D 124.6(46) . 2_666 C9D C8D H8D 117.7(24) . . C12D C8D H8D 117.7(26) 2_666 . C8D C9D C10D 118.1(26) . . C8D C9D H9D 121.0(25) . . C10D C9D H9D 121.0(8) . . C11D C10D C9D 122.0(10) . . C11D C10D H10D 119.0(5) . . C9D C10D H10D 119.0(8) . . C10D C11D C12D 118.6(7) . . C10D C11D C13D 120.4(8) . . C12D C11D C13D 121.0(7) . . C8D C12D C12D 116.7(26) 2_666 2_666 C8D C12D C11D 123.3(27) 2_666 . C12D C12D C11D 120.0(8) 2_666 . C11D C13D H13D 109.5(5) . . C11D C13D H13E 109.5(5) . . H13D C13D H13E 109.5 . . C11D C13D H13F 109.5(5) . . H13D C13D H13F 109.5 . . H13E C13D H13F 109.5 . . loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 S1 O2 1.454(3) . S1 O3 1.457(2) . S1 O1 1.462(2) . S1 C1 1.772(3) . C1 C6 1.375(5) . C1 C2 1.376(5) . C2 C3 1.390(5) . C2 H2 0.95 . C3 C4 1.384(5) . C3 H3 0.95 . C4 C5 1.377(5) . C4 C4 1.488(6) 2_656 C5 C6 1.388(5) . C5 H5 0.95 . C6 H6 0.95 . N1 C7 1.326(4) . N1 H1NA 0.88 . N1 H1NB 0.88 . N2 C7 1.320(4) . N2 H2NA 0.88 . N2 H2NB 0.88 . N3 C7 1.320(4) . N3 H3NA 0.88 . N3 H3NB 0.88 . C8 C12 1.37(6) 2_566 C8 C9 1.45(6) . C8 H8 0.95 . C9 C10 1.41(2) . C9 H9 0.95 . C10 C11 1.360(10) . C10 H10 0.95 . C11 C12 1.452(10) . C11 C13 1.496(11) . C12 C8 1.37(6) 2_566 C12 C12 1.413(15) 2_566 C13 H13A 0.98 . C13 H13B 0.98 . C13 H13C 0.98 . C8D C9D 1.34(6) . C8D C12D 1.40(5) 2_666 C8D H8D 0.95 . C9D C10D 1.41(2) . C9D H9D 0.95 . C10D C11D 1.368(11) . C10D H10D 0.95 . C11D C12D 1.439(10) . C11D C13D 1.485(11) . C12D C8D 1.40(5) 2_666 C12D C12D 1.415(14) 2_666 C13D H13D 0.98 . C13D H13E 0.98 . C13D H13F 0.98 . loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 O2 S1 C1 C6 31.6(4) . . O3 S1 C1 C6 151.9(3) . . O1 S1 C1 C6 -88.5(3) . . O2 S1 C1 C2 -151.1(3) . . O3 S1 C1 C2 -30.8(4) . . O1 S1 C1 C2 88.9(3) . . C6 C1 C2 C3 -2.3(6) . . S1 C1 C2 C3 -179.7(3) . . C1 C2 C3 C4 0.4(7) . . C2 C3 C4 C5 2.0(7) . . C2 C3 C4 C4 -178.9(4) . 2_656 C3 C4 C5 C6 -2.6(7) . . C4 C4 C5 C6 178.4(4) 2_656 . C2 C1 C6 C5 1.8(7) . . S1 C1 C6 C5 179.2(3) . . C4 C5 C6 C1 0.7(7) . . C12 C8 C9 C10 -1.6(55) 2_566 . C8 C9 C10 C11 0.0(33) . . C9 C10 C11 C12 1.3(14) . . C9 C10 C11 C13 -178.8(12) . . C10 C11 C12 C8 178.4(27) . 2_566 C13 C11 C12 C8 -1.4(28) . 2_566 C10 C11 C12 C12 -1.2(12) . 2_566 C13 C11 C12 C12 179.0(8) . 2_566 C12D C8D C9D C10D 0.9(63) 2_666 . C8D C9D C10D C11D 0.1(37) . . C9D C10D C11D C12D 0.3(16) . . C9D C10D C11D C13D 178.0(13) . . C10D C11D C12D C8D -179.1(29) . 2_666 C13D C11D C12D C8D 3.3(30) . 2_666 C10D C11D C12D C12D -1.5(12) . 2_666 C13D C11D C12D C12D -179.2(9) . 2_666 loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 PubChem 139089092