#------------------------------------------------------------------------------ #$Date: 2016-03-20 23:21:50 +0000 (Sun, 20 Mar 2016) $ #$Revision: 178377 $ #$URL: svn://www.crystallography.net/cod/cif/4/00/07/4000769.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4000769 loop_ _publ_author_name 'He, Jun' 'Yee, Ka-Kit' 'Xu, Zhengtao' 'Zeller, Matthias' 'Hunter, Allen D.' 'Chui, Stephen Sin-Yin' 'Che, Chi-Ming' _publ_section_title ; Thioether Side Chains Improve the Stability, Fluorescence, and Metal Uptake of a Metal--Organic Framework ; _journal_issue 11 _journal_name_full 'Chemistry of Materials' _journal_page_first 2940 _journal_paper_doi 10.1021/cm200557e _journal_volume 23 _journal_year 2011 _chemical_formula_sum 'C42 H48 O13 S12 Zn4' _chemical_formula_weight 1407.00 _chemical_name_systematic ; ? ; _space_group_IT_number 225 _symmetry_cell_setting cubic _symmetry_space_group_name_Hall '-F 4 2 3' _symmetry_space_group_name_H-M 'F m -3 m' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 25.559(6) _cell_length_b 25.559 _cell_length_c 25.559 _cell_measurement_reflns_used 433 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 16.80 _cell_measurement_theta_min 2.25 _cell_volume 16697(4) _computing_cell_refinement 'Apex2 v2008.2-4' _computing_data_collection 'Apex2 v2008.2-4 (Bruker, 2008)' _computing_data_reduction 'Apex2 v2008.2-4' _computing_molecular_graphics 'SHELXTL 6.14' _computing_publication_material 'SHELXTL 6.14' _computing_structure_refinement 'SHELXTL 6.14' _computing_structure_solution 'SHELXTL 6.14 (Bruker, 2000-2003; Sheldrick, 2008)' _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 0.980 _diffrn_measured_fraction_theta_max 0.980 _diffrn_measurement_device_type 'Bruker AXS SMART APEX CCD diffractometer' _diffrn_measurement_method '\w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0613 _diffrn_reflns_av_sigmaI/netI 0.0798 _diffrn_reflns_limit_h_max 35 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_k_min -32 _diffrn_reflns_limit_l_max 3 _diffrn_reflns_limit_l_min -34 _diffrn_reflns_number 6397 _diffrn_reflns_theta_full 30.49 _diffrn_reflns_theta_max 30.49 _diffrn_reflns_theta_min 1.38 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 1.474 _exptl_absorpt_correction_T_max 0.863 _exptl_absorpt_correction_T_min 0.798 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'Apex2 v2008.2-4 (Bruker, 2008)' _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.119 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 5728 _exptl_crystal_size_max 0.14 _exptl_crystal_size_mid 0.12 _exptl_crystal_size_min 0.10 _platon_squeeze_details ; ; _refine_diff_density_max 0.559 _refine_diff_density_min -0.370 _refine_diff_density_rms 0.088 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.834 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 49 _refine_ls_number_reflns 1306 _refine_ls_number_restraints 24 _refine_ls_restrained_S_all 0.833 _refine_ls_R_factor_all 0.2272 _refine_ls_R_factor_gt 0.0948 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.2000P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.2878 _refine_ls_wR_factor_ref 0.3330 _reflns_number_gt 372 _reflns_number_total 1306 _reflns_threshold_expression I>2\s(I) _cod_data_source_file cm200557e_si_002.cif _cod_data_source_block 1 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Cubic' changed to 'cubic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 16696(4) _cod_original_sg_symbol_H-M Fm-3m _cod_database_code 4000769 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, z' '-x, y, -z' 'x, -y, -z' 'z, x, y' 'z, -x, -y' '-z, -x, y' '-z, x, -y' 'y, z, x' '-y, z, -x' 'y, -z, -x' '-y, -z, x' 'y, x, -z' '-y, -x, -z' 'y, -x, z' '-y, x, z' 'x, z, -y' '-x, z, y' '-x, -z, -y' 'x, -z, y' 'z, y, -x' 'z, -y, x' '-z, y, x' '-z, -y, -x' 'x, y+1/2, z+1/2' '-x, -y+1/2, z+1/2' '-x, y+1/2, -z+1/2' 'x, -y+1/2, -z+1/2' 'z, x+1/2, y+1/2' 'z, -x+1/2, -y+1/2' '-z, -x+1/2, y+1/2' '-z, x+1/2, -y+1/2' 'y, z+1/2, x+1/2' '-y, z+1/2, -x+1/2' 'y, -z+1/2, -x+1/2' '-y, -z+1/2, x+1/2' 'y, x+1/2, -z+1/2' '-y, -x+1/2, -z+1/2' 'y, -x+1/2, z+1/2' '-y, x+1/2, z+1/2' 'x, z+1/2, -y+1/2' '-x, z+1/2, y+1/2' '-x, -z+1/2, -y+1/2' 'x, -z+1/2, y+1/2' 'z, y+1/2, -x+1/2' 'z, -y+1/2, x+1/2' '-z, y+1/2, x+1/2' '-z, -y+1/2, -x+1/2' 'x+1/2, y, z+1/2' '-x+1/2, -y, z+1/2' '-x+1/2, y, -z+1/2' 'x+1/2, -y, -z+1/2' 'z+1/2, x, y+1/2' 'z+1/2, -x, -y+1/2' '-z+1/2, -x, y+1/2' '-z+1/2, x, -y+1/2' 'y+1/2, z, x+1/2' '-y+1/2, z, -x+1/2' 'y+1/2, -z, -x+1/2' '-y+1/2, -z, x+1/2' 'y+1/2, x, -z+1/2' '-y+1/2, -x, -z+1/2' 'y+1/2, -x, z+1/2' '-y+1/2, x, z+1/2' 'x+1/2, z, -y+1/2' '-x+1/2, z, y+1/2' '-x+1/2, -z, -y+1/2' 'x+1/2, -z, y+1/2' 'z+1/2, y, -x+1/2' 'z+1/2, -y, x+1/2' '-z+1/2, y, x+1/2' '-z+1/2, -y, -x+1/2' 'x+1/2, y+1/2, z' '-x+1/2, -y+1/2, z' '-x+1/2, y+1/2, -z' 'x+1/2, -y+1/2, -z' 'z+1/2, x+1/2, y' 'z+1/2, -x+1/2, -y' '-z+1/2, -x+1/2, y' '-z+1/2, x+1/2, -y' 'y+1/2, z+1/2, x' '-y+1/2, z+1/2, -x' 'y+1/2, -z+1/2, -x' '-y+1/2, -z+1/2, x' 'y+1/2, x+1/2, -z' '-y+1/2, -x+1/2, -z' 'y+1/2, -x+1/2, z' '-y+1/2, x+1/2, z' 'x+1/2, z+1/2, -y' '-x+1/2, z+1/2, y' '-x+1/2, -z+1/2, -y' 'x+1/2, -z+1/2, y' 'z+1/2, y+1/2, -x' 'z+1/2, -y+1/2, x' '-z+1/2, y+1/2, x' '-z+1/2, -y+1/2, -x' '-x, -y, -z' 'x, y, -z' 'x, -y, z' '-x, y, z' '-z, -x, -y' '-z, x, y' 'z, x, -y' 'z, -x, y' '-y, -z, -x' 'y, -z, x' '-y, z, x' 'y, z, -x' '-y, -x, z' 'y, x, z' '-y, x, -z' 'y, -x, -z' '-x, -z, y' 'x, -z, -y' 'x, z, y' '-x, z, -y' '-z, -y, x' '-z, y, -x' 'z, -y, -x' 'z, y, x' '-x, -y+1/2, -z+1/2' 'x, y+1/2, -z+1/2' 'x, -y+1/2, z+1/2' '-x, y+1/2, z+1/2' '-z, -x+1/2, -y+1/2' '-z, x+1/2, y+1/2' 'z, x+1/2, -y+1/2' 'z, -x+1/2, y+1/2' '-y, -z+1/2, -x+1/2' 'y, -z+1/2, x+1/2' '-y, z+1/2, x+1/2' 'y, z+1/2, -x+1/2' '-y, -x+1/2, z+1/2' 'y, x+1/2, z+1/2' '-y, x+1/2, -z+1/2' 'y, -x+1/2, -z+1/2' '-x, -z+1/2, y+1/2' 'x, -z+1/2, -y+1/2' 'x, z+1/2, y+1/2' '-x, z+1/2, -y+1/2' '-z, -y+1/2, x+1/2' '-z, y+1/2, -x+1/2' 'z, -y+1/2, -x+1/2' 'z, y+1/2, x+1/2' '-x+1/2, -y, -z+1/2' 'x+1/2, y, -z+1/2' 'x+1/2, -y, z+1/2' '-x+1/2, y, z+1/2' '-z+1/2, -x, -y+1/2' '-z+1/2, x, y+1/2' 'z+1/2, x, -y+1/2' 'z+1/2, -x, y+1/2' '-y+1/2, -z, -x+1/2' 'y+1/2, -z, x+1/2' '-y+1/2, z, x+1/2' 'y+1/2, z, -x+1/2' '-y+1/2, -x, z+1/2' 'y+1/2, x, z+1/2' '-y+1/2, x, -z+1/2' 'y+1/2, -x, -z+1/2' '-x+1/2, -z, y+1/2' 'x+1/2, -z, -y+1/2' 'x+1/2, z, y+1/2' '-x+1/2, z, -y+1/2' '-z+1/2, -y, x+1/2' '-z+1/2, y, -x+1/2' 'z+1/2, -y, -x+1/2' 'z+1/2, y, x+1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, y+1/2, -z' 'x+1/2, -y+1/2, z' '-x+1/2, y+1/2, z' '-z+1/2, -x+1/2, -y' '-z+1/2, x+1/2, y' 'z+1/2, x+1/2, -y' 'z+1/2, -x+1/2, y' '-y+1/2, -z+1/2, -x' 'y+1/2, -z+1/2, x' '-y+1/2, z+1/2, x' 'y+1/2, z+1/2, -x' '-y+1/2, -x+1/2, z' 'y+1/2, x+1/2, z' '-y+1/2, x+1/2, -z' 'y+1/2, -x+1/2, -z' '-x+1/2, -z+1/2, y' 'x+1/2, -z+1/2, -y' 'x+1/2, z+1/2, y' '-x+1/2, z+1/2, -y' '-z+1/2, -y+1/2, x' '-z+1/2, y+1/2, -x' 'z+1/2, -y+1/2, -x' 'z+1/2, y+1/2, x' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group Zn1 Zn 0.29360(3) 0.70640(3) 0.29360(3) 0.0959(6) Uani 1 6 d S . . O1 O 0.2500 0.7500 0.2500 0.086(4) Uani 1 24 d S . . O2 O 0.2807(2) 0.7193(2) 0.3644(3) 0.191(3) Uani 1 2 d S . . C2 C 0.2500 0.7500 0.4476(4) 0.146(5) Uani 1 4 d SD . . C1 C 0.2500 0.7500 0.3863(4) 0.160(5) Uani 1 4 d S . . C3A C 0.2962(5) 0.7368(16) 0.4797(7) 0.152(10) Uani 0.25 1 d PDU A -1 H3A H 0.3316(8) 0.734(11) 0.4712(12) 0.182 Uiso 0.125 1 d PD B -1 S1A S 0.3558(7) 0.7335(11) 0.4467(7) 0.212(9) Uani 0.125 1 d PDU A -1 C3B C 0.2937(7) 0.7209(13) 0.4721(8) 0.152(10) Uani 0.25 1 d PD A -2 H3B H 0.3221(11) 0.6989(19) 0.4664(14) 0.182 Uiso 0.125 1 d PD C -2 S1B S 0.3421(8) 0.6818(9) 0.4442(7) 0.212(9) Uani 0.125 1 d PDU A -2 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Zn1 0.0959(6) 0.0959(6) 0.0959(6) 0.0068(4) -0.0068(4) 0.0068(4) O1 0.086(4) 0.086(4) 0.086(4) 0.000 0.000 0.000 O2 0.236(5) 0.236(5) 0.101(5) -0.010(3) 0.010(3) 0.090(6) C2 0.183(8) 0.183(8) 0.072(7) 0.000 0.000 -0.005(10) C1 0.205(9) 0.205(9) 0.070(7) 0.000 0.000 -0.011(13) C3A 0.134(11) 0.25(3) 0.074(7) -0.039(11) 0.001(6) 0.013(13) S1A 0.200(13) 0.32(2) 0.119(7) -0.010(12) -0.014(8) 0.069(15) C3B 0.134(11) 0.25(3) 0.074(7) -0.039(11) 0.001(6) 0.013(13) S1B 0.200(13) 0.32(2) 0.119(7) -0.010(12) -0.014(8) 0.069(15) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Zn Zn 0.2839 1.4301 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 O2 Zn1 O2 108.1(2) 6_566 . O2 Zn1 O2 108.1(2) 6_566 12_665 O2 Zn1 O2 108.1(2) . 12_665 O2 Zn1 O1 110.8(2) 6_566 . O2 Zn1 O1 110.8(2) . . O2 Zn1 O1 110.8(2) 12_665 . O2 Zn1 Zn1 124.04(18) 6_566 74_565 O2 Zn1 Zn1 75.5(2) . 74_565 O2 Zn1 Zn1 124.04(18) 12_665 74_565 O1 Zn1 Zn1 35.3 . 74_565 O2 Zn1 Zn1 75.5(2) 6_566 28_565 O2 Zn1 Zn1 124.04(18) . 28_565 O2 Zn1 Zn1 124.04(18) 12_665 28_565 O1 Zn1 Zn1 35.3 . 28_565 Zn1 Zn1 Zn1 60.0 74_565 28_565 O2 Zn1 Zn1 124.04(18) 6_566 51 O2 Zn1 Zn1 124.04(18) . 51 O2 Zn1 Zn1 75.5(2) 12_665 51 O1 Zn1 Zn1 35.3 . 51 Zn1 Zn1 Zn1 60.0 74_565 51 Zn1 Zn1 Zn1 60.0 28_565 51 Zn1 O1 Zn1 109.5 . 28_565 Zn1 O1 Zn1 109.5 . 74_565 Zn1 O1 Zn1 109.5 28_565 74_565 Zn1 O1 Zn1 109.5 . 51 Zn1 O1 Zn1 109.471(1) 28_565 51 Zn1 O1 Zn1 109.5 74_565 51 C1 O2 Zn1 131.2(8) . . C3A C2 C3A 112.5(16) 182_455 109_665 C3A C2 C3A 112.5(16) 74_565 . C3B C2 C3B 125(2) . 182_455 C3B C2 C3B 125(2) 74_565 109_665 C3B C2 C3B 130.0(18) 182_455 109_665 C3A C2 C1 123.7(8) 182_455 . C3A C2 C1 123.7(8) 74_565 . C3A C2 C1 123.7(8) 109_665 . C3A C2 C1 123.7(8) . . C3B C2 C1 115.0(9) 74_565 . C3B C2 C1 115.0(9) . . C3B C2 C1 115.0(9) 182_455 . C3B C2 C1 115.0(9) 109_665 . O2 C1 O2 126.5(12) 74_565 . O2 C1 C2 116.8(6) 74_565 . O2 C1 C2 116.8(6) . . C2 C3A S1A 116.2(14) . . C2 C3A H3A 131(5) . . C2 C3B S1B 130.6(16) . . C2 C3B H3B 146(3) . . loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 Zn1 O2 1.869(7) 6_566 Zn1 O2 1.869(7) . Zn1 O2 1.869(7) 12_665 Zn1 O1 1.9302(14) . Zn1 Zn1 3.152(2) 74_565 Zn1 Zn1 3.152(2) 28_565 Zn1 Zn1 3.152(2) 51 O1 Zn1 1.9303(14) 28_565 O1 Zn1 1.9303(14) 74_565 O1 Zn1 1.9304(14) 51 O2 C1 1.242(7) . C2 C3A 1.478(15) 182_455 C2 C3A 1.478(15) 74_565 C2 C3A 1.478(15) 109_665 C2 C3A 1.478(15) . C2 C3B 1.479(16) 74_565 C2 C3B 1.479(16) . C2 C3B 1.479(16) 182_455 C2 C3B 1.479(16) 109_665 C2 C1 1.567(15) . C1 O2 1.242(7) 74_565 C3A S1A 1.743(17) . C3A H3A 0.931(11) . S1A H3B 1.33(6) . C3B S1B 1.744(18) . C3B H3A 1.03(11) . C3B H3B 0.931(10) . loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 O2 Zn1 O1 Zn1 0.0 6_566 28_565 O2 Zn1 O1 Zn1 120.0 . 28_565 O2 Zn1 O1 Zn1 -120.0 12_665 28_565 Zn1 Zn1 O1 Zn1 120.0 74_565 28_565 Zn1 Zn1 O1 Zn1 -120.0 51 28_565 O2 Zn1 O1 Zn1 -120.0 6_566 74_565 O2 Zn1 O1 Zn1 0.0 . 74_565 O2 Zn1 O1 Zn1 120.0 12_665 74_565 Zn1 Zn1 O1 Zn1 -120.0 28_565 74_565 Zn1 Zn1 O1 Zn1 120.0 51 74_565 O2 Zn1 O1 Zn1 120.0 6_566 51 O2 Zn1 O1 Zn1 -120.0 . 51 O2 Zn1 O1 Zn1 0.0 12_665 51 Zn1 Zn1 O1 Zn1 -120.0 74_565 51 Zn1 Zn1 O1 Zn1 120.0 28_565 51 O2 Zn1 O2 C1 121.6(3) 6_566 . O2 Zn1 O2 C1 -121.6(3) 12_665 . O1 Zn1 O2 C1 0.000(3) . . Zn1 Zn1 O2 C1 -0.001(2) 74_565 . Zn1 Zn1 O2 C1 37.12(9) 28_565 . Zn1 Zn1 O2 C1 -37.12(9) 51 . Zn1 O2 C1 O2 0.003(4) . 74_565 Zn1 O2 C1 C2 180.000(2) . . C3A C2 C1 O2 -29.1(19) 182_455 74_565 C3A C2 C1 O2 29.1(19) 74_565 74_565 C3A C2 C1 O2 150.9(19) 109_665 74_565 C3A C2 C1 O2 -150.9(19) . 74_565 C3B C2 C1 O2 11.3(15) 74_565 74_565 C3B C2 C1 O2 -168.7(15) . 74_565 C3B C2 C1 O2 -11.3(15) 182_455 74_565 C3B C2 C1 O2 168.7(15) 109_665 74_565 C3A C2 C1 O2 150.9(19) 182_455 . C3A C2 C1 O2 -150.9(19) 74_565 . C3A C2 C1 O2 -29.1(19) 109_665 . C3A C2 C1 O2 29.1(19) . . C3B C2 C1 O2 -168.7(15) 74_565 . C3B C2 C1 O2 11.3(15) . . C3B C2 C1 O2 168.7(15) 182_455 . C3B C2 C1 O2 -11.3(15) 109_665 . C3A C2 C3A S1A -122.5(19) 182_455 . C3A C2 C3A S1A -168(4) 74_565 . C3A C2 C3A S1A 120(2) 109_665 . C3B C2 C3A S1A -149(2) 74_565 . C3B C2 C3A S1A 78(4) . . C3B C2 C3A S1A -129(3) 182_455 . C3B C2 C3A S1A 99(4) 109_665 . C1 C2 C3A S1A 12(4) . . C3A C2 C3B S1B -151(3) 182_455 . C3A C2 C3B S1B 157(2) 74_565 . C3A C2 C3B S1B 107(4) 109_665 . C3A C2 C3B S1B -130(7) . . C3B C2 C3B S1B 174(3) 74_565 . C3B C2 C3B S1B -161.0(13) 182_455 . C3B C2 C3B S1B 88(3) 109_665 . C1 C2 C3B S1B -6(3) . . loop_ _platon_squeeze_void_nr _platon_squeeze_void_average_x _platon_squeeze_void_average_y _platon_squeeze_void_average_z _platon_squeeze_void_volume _platon_squeeze_void_count_electrons 1 -0.090 -0.047 -0.036 8051.5 292.0