#------------------------------------------------------------------------------ #$Date: 2012-02-24 17:13:23 +0000 (Fri, 24 Feb 2012) $ #$Revision: 34330 $ #$URL: svn://www.crystallography.net/cod/cif/4/30/85/4308558.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4308558 loop_ _publ_author_name 'Bao-Qing Ma' 'Hao-Ling Sun' 'Song Gao' _publ_section_title ; Assembly of Hydrogen Bonded Diamondoid Networks Based on Synthetic Metal-Organic Tetrahedral Nodes ; _journal_name_full 'Inorganic Chemistry' _journal_page_first 837 _journal_page_last 839 _journal_volume 44 _journal_year 2005 _chemical_formula_sum 'C40 H40 Cl2 Mn N8 O20' _chemical_formula_weight 1078.64 _chemical_name_systematic ; ? ; _space_group_IT_number 82 _symmetry_cell_setting tetragonal _symmetry_space_group_name_Hall 'I -4' _symmetry_space_group_name_H-M 'I -4' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 23.150(3) _cell_length_b 23.150(3) _cell_length_c 8.1500(16) _cell_measurement_temperature 297(2) _cell_volume 4367.8(12) _computing_cell_refinement Scalepack _computing_data_collection 'Nonius Kappa CCD' _computing_data_reduction Maxus _computing_molecular_graphics 'Simens SHEXLTL-90' _computing_publication_material 'Simens SHELXL-97' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 297(2) _diffrn_detector_area_resol_mean 0.72 _diffrn_measured_fraction_theta_full 0.996 _diffrn_measured_fraction_theta_max 0.996 _diffrn_measurement_device_type 'Nonius Kappa CCD' _diffrn_measurement_method CCD _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0000 _diffrn_reflns_av_sigmaI/netI 0.0294 _diffrn_reflns_limit_h_max 30 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 21 _diffrn_reflns_limit_k_min -20 _diffrn_reflns_limit_l_max 10 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 2782 _diffrn_reflns_theta_full 27.89 _diffrn_reflns_theta_max 27.89 _diffrn_reflns_theta_min 3.52 _exptl_absorpt_coefficient_mu 0.519 _exptl_absorpt_correction_T_max 0.846 _exptl_absorpt_correction_T_min 0.683 _exptl_absorpt_correction_type SORTAV _exptl_crystal_colour red _exptl_crystal_density_diffrn 1.640 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 2220 _exptl_crystal_size_max 0.24 _exptl_crystal_size_mid 0.16 _exptl_crystal_size_min 0.10 _refine_diff_density_max 1.004 _refine_diff_density_min -0.726 _refine_diff_density_rms 0.105 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.00 _refine_ls_extinction_coef 0.0012(8) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.075 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 310 _refine_ls_number_reflns 2782 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.075 _refine_ls_R_factor_all 0.0763 _refine_ls_R_factor_gt 0.0662 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1568P)^2^+2.6069P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1966 _refine_ls_wR_factor_ref 0.2062 _reflns_number_gt 2419 _reflns_number_total 2782 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file ic048648qsi20041225_090014.cif _[local]_cod_data_source_block i-4 _cod_database_code 4308558 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, z' 'y, -x, -z' '-y, x, -z' 'x+1/2, y+1/2, z+1/2' '-x+1/2, -y+1/2, z+1/2' 'y+1/2, -x+1/2, -z+1/2' '-y+1/2, x+1/2, -z+1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group Mn1 Mn 1.0000 0.5000 0.7500 0.0259(4) Uani 1 4 d S . . Mn2 Mn 0.5000 0.5000 0.5000 0.0260(4) Uani 1 4 d S . . O1 O 0.91095(18) 0.4728(2) 0.7413(7) 0.0445(11) Uani 1 1 d . . . O2 O 0.58009(17) 0.5636(2) 0.0693(6) 0.0421(11) Uani 1 1 d . . . O3 O 1.0000 0.5000 0.4849(8) 0.0383(13) Uani 1 2 d S . . H1 H 0.986(3) 0.475(3) 0.473(11) 0.04(2) Uiso 1 1 d . . . O4 O 0.4451(2) 0.57727(17) 0.4904(6) 0.0393(10) Uani 1 1 d . . . O5 O 0.4334(2) 0.92057(19) -0.1869(7) 0.0477(12) Uani 1 1 d . . . O6 O 0.5000 0.5000 0.2332(8) 0.0356(12) Uani 1 2 d S . . H2 H 0.477(2) 0.490(3) 0.173(8) 0.015(13) Uiso 1 1 d . . . O7 O 0.6691(3) 0.7306(3) 0.474(2) 0.137(6) Uani 1 1 d . . . O8 O 0.6965(14) 0.7941(13) 1.123(5) 0.309(13) Uiso 1 1 d . . . O9 O 0.6314(7) 0.8112(7) 0.945(3) 0.183(6) Uiso 1 1 d . . . O10 O 0.7018(12) 0.7485(10) 0.873(4) 0.264(9) Uiso 1 1 d . . . O11 O 0.6250(6) 0.7289(6) 1.055(2) 0.147(4) Uiso 1 1 d . . . N1 N 0.86864(19) 0.4869(2) 0.6409(7) 0.0324(10) Uani 1 1 d . . . N2 N 0.62742(19) 0.5522(2) 0.1524(6) 0.0316(10) Uani 1 1 d . . . N3 N 0.4450(2) 0.62011(19) 0.3823(6) 0.0290(9) Uani 1 1 d . . . N4 N 0.4369(2) 0.8716(2) -0.1083(7) 0.0363(11) Uani 1 1 d . . . C1 C 0.8266(3) 0.4479(2) 0.6132(8) 0.0335(12) Uani 1 1 d . . . H1A H 0.8289 0.4118 0.6632 0.040 Uiso 1 1 calc R . . C2 C 0.7814(2) 0.4597(2) 0.5149(8) 0.0358(12) Uani 1 1 d . . . H2A H 0.7535 0.4315 0.4971 0.043 Uiso 1 1 calc R . . C3 C 0.7756(2) 0.5140(2) 0.4387(7) 0.0287(11) Uani 1 1 d . . . C4 C 0.8195(2) 0.5534(2) 0.4717(7) 0.0324(12) Uani 1 1 d . . . H4A H 0.8177 0.5900 0.4249 0.039 Uiso 1 1 calc R . . C5 C 0.8654(2) 0.5397(2) 0.5717(8) 0.0346(12) Uani 1 1 d . . . H5A H 0.8942 0.5669 0.5914 0.042 Uiso 1 1 calc R . . C6 C 0.7262(2) 0.5274(2) 0.3359(7) 0.0290(11) Uani 1 1 d . . . C7 C 0.6923(3) 0.4843(2) 0.2635(8) 0.0333(12) Uani 1 1 d . . . H7A H 0.7027 0.4459 0.2776 0.040 Uiso 1 1 calc R . . C8 C 0.6445(2) 0.4971(3) 0.1732(8) 0.0339(12) Uani 1 1 d . . . H8B H 0.6234 0.4673 0.1253 0.041 Uiso 1 1 calc R . . C9 C 0.6592(3) 0.5957(3) 0.2147(8) 0.0355(13) Uani 1 1 d . . . H9B H 0.6481 0.6337 0.1954 0.043 Uiso 1 1 calc R . . C10 C 0.7074(2) 0.5846(2) 0.3059(7) 0.0304(11) Uani 1 1 d . . . H10A H 0.7284 0.6153 0.3492 0.037 Uiso 1 1 calc R . . C11 C 0.4940(3) 0.6389(2) 0.3103(8) 0.0319(12) Uani 1 1 d . . . H11B H 0.5285 0.6195 0.3296 0.038 Uiso 1 1 calc R . . C12 C 0.4937(2) 0.6862(2) 0.2089(7) 0.0312(12) Uani 1 1 d . . . H12A H 0.5280 0.6986 0.1613 0.037 Uiso 1 1 calc R . . C13 C 0.4417(2) 0.7165(2) 0.1757(7) 0.0286(11) Uani 1 1 d . . . C14 C 0.3922(3) 0.6944(3) 0.2480(9) 0.0372(12) Uani 1 1 d . . . H14A H 0.3568 0.7120 0.2269 0.045 Uiso 1 1 calc R . . C15 C 0.3940(3) 0.6470(3) 0.3504(8) 0.0371(13) Uani 1 1 d . . . H15A H 0.3601 0.6334 0.3980 0.045 Uiso 1 1 calc R . . C16 C 0.4409(3) 0.7691(2) 0.0723(7) 0.0309(11) Uani 1 1 d . . . C17 C 0.4901(3) 0.7985(2) 0.0272(8) 0.0359(13) Uani 1 1 d . . . H17A H 0.5260 0.7841 0.0578 0.043 Uiso 1 1 calc R . . C18 C 0.4872(3) 0.8491(3) -0.0624(8) 0.0396(14) Uani 1 1 d . . . H18A H 0.5213 0.8678 -0.0914 0.048 Uiso 1 1 calc R . . C19 C 0.3864(3) 0.8416(3) -0.0731(9) 0.0399(13) Uani 1 1 d . . . H19A H 0.3511 0.8552 -0.1120 0.048 Uiso 1 1 calc R . . C20 C 0.3885(2) 0.7926(2) 0.0179(8) 0.0357(12) Uani 1 1 d . . . H20A H 0.3542 0.7741 0.0450 0.043 Uiso 1 1 calc R . . Cl1 Cl 0.66578(8) 0.76726(9) 1.0043(3) 0.0624(6) Uani 1 1 d . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Mn1 0.0274(5) 0.0274(5) 0.0229(8) 0.000 0.000 0.000 Mn2 0.0270(5) 0.0270(5) 0.0240(8) 0.000 0.000 0.000 O1 0.0296(19) 0.059(3) 0.045(3) 0.023(2) -0.010(2) -0.0059(18) O2 0.0260(19) 0.059(3) 0.041(2) 0.016(2) -0.0064(18) 0.0000(18) O3 0.052(4) 0.037(4) 0.026(3) 0.000 0.000 -0.014(3) O4 0.047(2) 0.0316(19) 0.040(2) 0.0108(18) 0.011(2) 0.0067(17) O5 0.072(3) 0.031(2) 0.040(2) 0.0065(19) -0.012(2) -0.002(2) O6 0.039(3) 0.045(3) 0.023(3) 0.000 0.000 -0.011(3) O7 0.050(3) 0.078(5) 0.282(18) 0.041(8) 0.005(7) -0.001(3) N1 0.025(2) 0.043(3) 0.029(3) 0.005(2) 0.0006(19) -0.0014(18) N2 0.024(2) 0.044(3) 0.027(2) 0.007(2) 0.0015(18) -0.0017(18) N3 0.033(2) 0.024(2) 0.030(2) -0.0023(18) -0.001(2) 0.0014(16) N4 0.053(3) 0.024(2) 0.031(2) -0.0010(19) -0.005(2) -0.001(2) C1 0.036(3) 0.029(2) 0.035(3) 0.005(2) -0.001(2) -0.006(2) C2 0.034(3) 0.029(2) 0.044(3) -0.002(2) -0.005(3) -0.002(2) C3 0.029(2) 0.031(2) 0.026(2) -0.001(2) 0.002(2) 0.000(2) C4 0.031(2) 0.036(3) 0.030(3) 0.005(2) -0.004(2) -0.003(2) C5 0.032(3) 0.029(3) 0.043(3) 0.004(2) -0.004(2) -0.005(2) C6 0.027(2) 0.031(2) 0.029(3) -0.003(2) 0.002(2) 0.000(2) C7 0.040(3) 0.027(2) 0.033(3) 0.003(2) -0.004(3) -0.001(2) C8 0.032(3) 0.036(3) 0.033(3) -0.002(2) -0.003(2) -0.006(2) C9 0.030(3) 0.035(3) 0.042(3) 0.003(2) 0.001(2) -0.001(2) C10 0.026(2) 0.031(3) 0.034(3) 0.002(2) -0.002(2) -0.004(2) C11 0.034(3) 0.030(3) 0.031(3) -0.006(2) 0.003(2) 0.007(2) C12 0.029(2) 0.034(3) 0.031(3) 0.001(2) 0.003(2) 0.002(2) C13 0.031(3) 0.026(2) 0.028(3) -0.004(2) -0.002(2) 0.001(2) C14 0.032(3) 0.042(3) 0.039(3) 0.006(3) -0.005(3) 0.003(2) C15 0.032(3) 0.040(3) 0.039(3) 0.002(3) -0.002(2) -0.003(2) C16 0.041(3) 0.028(2) 0.024(2) -0.003(2) -0.005(2) 0.003(2) C17 0.045(3) 0.032(3) 0.031(3) -0.001(2) -0.008(2) 0.001(2) C18 0.045(3) 0.040(3) 0.034(3) 0.002(3) -0.003(3) -0.010(3) C19 0.041(3) 0.038(3) 0.040(3) -0.001(3) -0.004(3) 0.009(2) C20 0.031(3) 0.037(3) 0.039(3) 0.000(3) 0.002(2) 0.002(2) Cl1 0.0496(9) 0.0530(10) 0.0846(15) 0.0003(10) 0.0108(11) -0.0001(7) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Mn Mn 0.3368 0.7283 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag O1 Mn1 O1 90.063(12) 8_646 . ? O1 Mn1 O1 90.063(12) 8_646 2_765 ? O1 Mn1 O1 176.2(3) . 2_765 ? O1 Mn1 O1 176.2(3) 8_646 7_566 ? O1 Mn1 O1 90.063(11) . 7_566 ? O1 Mn1 O1 90.063(11) 2_765 7_566 ? O1 Mn1 O3 88.11(14) 8_646 7_566 ? O1 Mn1 O3 91.89(14) . 7_566 ? O1 Mn1 O3 91.89(14) 2_765 7_566 ? O1 Mn1 O3 88.11(14) 7_566 7_566 ? O1 Mn1 O3 91.89(14) 8_646 . ? O1 Mn1 O3 88.11(14) . . ? O1 Mn1 O3 88.11(14) 2_765 . ? O1 Mn1 O3 91.89(14) 7_566 . ? O3 Mn1 O3 180.000(1) 7_566 . ? O6 Mn2 O6 180.000(1) 3_566 . ? O6 Mn2 O4 87.96(13) 3_566 4_656 ? O6 Mn2 O4 92.04(13) . 4_656 ? O6 Mn2 O4 92.04(13) 3_566 2_665 ? O6 Mn2 O4 87.96(13) . 2_665 ? O4 Mn2 O4 90.072(10) 4_656 2_665 ? O6 Mn2 O4 92.04(13) 3_566 . ? O6 Mn2 O4 87.96(13) . . ? O4 Mn2 O4 90.072(10) 4_656 . ? O4 Mn2 O4 175.9(3) 2_665 . ? O6 Mn2 O4 87.96(13) 3_566 3_566 ? O6 Mn2 O4 92.04(13) . 3_566 ? O4 Mn2 O4 175.9(3) 4_656 3_566 ? O4 Mn2 O4 90.072(11) 2_665 3_566 ? O4 Mn2 O4 90.072(11) . 3_566 ? N1 O1 Mn1 131.2(3) . . ? N3 O4 Mn2 129.3(3) . . ? O1 N1 C1 118.3(5) . . ? O1 N1 C5 121.8(5) . . ? C1 N1 C5 119.9(5) . . ? O2 N2 C9 120.0(5) . . ? O2 N2 C8 119.9(5) . . ? C9 N2 C8 120.1(5) . . ? O4 N3 C11 121.9(5) . . ? O4 N3 C15 118.1(5) . . ? C11 N3 C15 119.9(5) . . ? O5 N4 C18 122.3(5) . . ? O5 N4 C19 118.8(5) . . ? C18 N4 C19 118.9(5) . . ? C2 C1 N1 121.7(5) . . ? C1 C2 C3 121.2(5) . . ? C4 C3 C2 115.5(5) . . ? C4 C3 C6 123.1(5) . . ? C2 C3 C6 121.4(5) . . ? C5 C4 C3 121.9(5) . . ? N1 C5 C4 119.9(5) . . ? C7 C6 C10 114.9(5) . . ? C7 C6 C3 122.1(5) . . ? C10 C6 C3 122.9(5) . . ? C8 C7 C6 122.0(5) . . ? N2 C8 C7 120.8(5) . . ? N2 C9 C10 120.7(6) . . ? C9 C10 C6 121.5(5) . . ? N3 C11 C12 121.0(5) . . ? C11 C12 C13 120.9(5) . . ? C14 C13 C12 116.0(5) . . ? C14 C13 C16 122.3(5) . . ? C12 C13 C16 121.7(5) . . ? C15 C14 C13 121.7(5) . . ? N3 C15 C14 120.4(5) . . ? C17 C16 C20 116.0(5) . . ? C17 C16 C13 123.2(5) . . ? C20 C16 C13 120.7(5) . . ? C16 C17 C18 121.4(6) . . ? N4 C18 C17 121.5(6) . . ? C20 C19 N4 120.0(6) . . ? C19 C20 C16 122.0(6) . . ? O8 Cl1 O11 116.5(17) . . ? O8 Cl1 O9 102.5(15) . . ? O11 Cl1 O9 100.8(8) . . ? O8 Cl1 O10 111.7(17) . . ? O11 Cl1 O10 115.9(12) . . ? O9 Cl1 O10 107.4(14) . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag Mn1 O1 2.157(4) 8_646 ? Mn1 O1 2.157(4) . ? Mn1 O1 2.157(4) 2_765 ? Mn1 O1 2.157(4) 7_566 ? Mn1 O3 2.161(7) 7_566 ? Mn1 O3 2.161(6) . ? Mn2 O6 2.175(6) 3_566 ? Mn2 O6 2.175(6) . ? Mn2 O4 2.195(4) 4_656 ? Mn2 O4 2.195(4) 2_665 ? Mn2 O4 2.195(4) . ? Mn2 O4 2.195(4) 3_566 ? O1 N1 1.317(6) . ? O2 N2 1.314(6) . ? O4 N3 1.327(6) . ? O5 N4 1.305(6) . ? O8 Cl1 1.35(4) . ? O9 Cl1 1.378(17) . ? O10 Cl1 1.42(3) . ? O11 Cl1 1.361(14) . ? N1 C1 1.348(7) . ? N1 C5 1.349(7) . ? N2 C9 1.346(8) . ? N2 C8 1.348(8) . ? N3 C11 1.349(8) . ? N3 C15 1.361(8) . ? N4 C18 1.330(8) . ? N4 C19 1.389(8) . ? C1 C2 1.346(8) . ? C2 C3 1.408(8) . ? C3 C4 1.391(7) . ? C3 C6 1.452(8) . ? C4 C5 1.376(8) . ? C6 C7 1.400(8) . ? C6 C10 1.414(8) . ? C7 C8 1.361(8) . ? C9 C10 1.367(8) . ? C11 C12 1.372(9) . ? C12 C13 1.418(8) . ? C13 C14 1.387(8) . ? C13 C16 1.482(8) . ? C14 C15 1.378(9) . ? C16 C17 1.377(9) . ? C16 C20 1.401(8) . ? C17 C18 1.381(9) . ? C19 C20 1.356(9) . ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A O3 H1 O5 0.67(7) 2.19(7) 2.779(6) 148(10) 5_545 O6 H2 O2 0.77(6) 1.99(6) 2.718(5) 158(6) 2_665