#------------------------------------------------------------------------------ #$Date: 2016-02-16 20:30:59 +0000 (Tue, 16 Feb 2016) $ #$Revision: 176467 $ #$URL: svn://www.crystallography.net/cod/cif/4/30/88/4308863.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4308863 loop_ _publ_author_name 'Masahiro Kato' 'Kazunori Kojima' 'Taka-aki Okamura' 'Hitoshi Yamamoto' 'Takeshi Yamamura' 'Norikazu Ueyama' _publ_section_title ; Relation between Intramolecular NH...S Hydrogen Bonds and Coordination Number in Mercury(II) Complexes with Carbamoylbenzenethiol Derivatives ; _journal_name_full 'Inorganic Chemistry' _journal_page_first 4037 _journal_page_last 4044 _journal_paper_doi 10.1021/ic0481780 _journal_volume 44 _journal_year 2005 _chemical_formula_sum 'C48 H72 Hg N6 O4 S4' _chemical_formula_weight 1125.96 _chemical_name_systematic ; ? ; _space_group_IT_number 88 _symmetry_cell_setting tetragonal _symmetry_Int_Tables_number 88 _symmetry_space_group_name_Hall '-I 4ad' _symmetry_space_group_name_H-M 'I 41/a :2' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_date 'Sat Dec 18 14:31:05 2004' _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 12.679(3) _cell_length_b 12.679(3) _cell_length_c 33.381(6) _cell_measurement_reflns_used 25 _cell_measurement_temperature 296(2) _cell_measurement_theta_max 15.0 _cell_measurement_theta_min 14.4 _cell_volume 5366(2) _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SIR92 (Altomare et al., 1994)' _diffrn_ambient_temperature 296(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measurement_device_type 'Rigaku AFC5R' _diffrn_measurement_method \w-2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71069 _diffrn_reflns_av_R_equivalents 0.1099 _diffrn_reflns_av_sigmaI/netI 0.1898 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 15 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 39 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 2586 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 2.58 _exptl_absorpt_coefficient_mu 3.077 _exptl_absorpt_correction_T_max 0.540 _exptl_absorpt_correction_T_min 0.530 _exptl_absorpt_correction_type psi-scan _exptl_absorpt_process_details '(North, Phillips & Mathews, 1968)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.394 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prismatic _exptl_crystal_F_000 2312 _exptl_crystal_size_max 0.200 _exptl_crystal_size_mid 0.200 _exptl_crystal_size_min 0.200 _refine_diff_density_max 1.025 _refine_diff_density_min -1.490 _refine_diff_density_rms 0.165 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.052 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 161 _refine_ls_number_reflns 2358 _refine_ls_number_restraints 16 _refine_ls_restrained_S_all 1.050 _refine_ls_R_factor_all 0.1930 _refine_ls_R_factor_gt 0.0534 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0800P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1356 _refine_ls_wR_factor_ref 0.1810 _reflns_number_gt 1139 _reflns_number_total 2358 _reflns_threshold_expression >2sigma(I) _cod_data_source_file ic0481780si20041224_115553.cif _cod_data_source_block complex5 _cod_original_cell_volume 5366.2(19) _cod_original_sg_symbol_H-M 'I 41/a' _cod_original_formula_sum 'C48 H72 Hg N6 O4 S4 ' _cod_database_code 4308863 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y+1/2, z' '-y+3/4, x+1/4, z+1/4' 'y+1/4, -x+1/4, z+1/4' 'x+1/2, y+1/2, z+1/2' '-x+1/2, -y+1, z+1/2' '-y+5/4, x+3/4, z+3/4' 'y+3/4, -x+3/4, z+3/4' '-x, -y, -z' 'x, y-1/2, -z' 'y-3/4, -x-1/4, -z-1/4' '-y-1/4, x-1/4, -z-1/4' '-x+1/2, -y+1/2, -z+1/2' 'x+1/2, y, -z+1/2' 'y-1/4, -x+1/4, -z+1/4' '-y+1/4, x+1/4, -z+1/4' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group Hg1 Hg 1.0000 0.2500 0.1250 0.0497(4) Uani 1 4 d S . . S1 S 0.8743(2) 0.3365(3) 0.07521(10) 0.0576(9) Uani 1 1 d . . . O1 O 0.6978(9) 0.6329(9) 0.0425(4) 0.120(5) Uani 1 1 d . . . N1 N 0.8506(11) 0.5524(10) 0.0380(4) 0.087(4) Uani 1 1 d . . . H1 H 0.8905 0.5024 0.0466 0.104 Uiso 1 1 calc R . . N3 N 0.5000 0.2500 0.0393(4) 0.058(3) Uani 1 2 d SD . . C11 C 0.7784(9) 0.4057(10) 0.1037(4) 0.054(3) Uani 1 1 d . . . C12 C 0.7405(11) 0.3616(13) 0.1391(5) 0.086(5) Uani 1 1 d . . . H12 H 0.7715 0.2993 0.1479 0.103 Uiso 1 1 calc R . . C13 C 0.6614(13) 0.4031(15) 0.1618(6) 0.110(6) Uani 1 1 d . . . H13 H 0.6414 0.3718 0.1858 0.133 Uiso 1 1 calc R . . C14 C 0.6112(12) 0.4943(16) 0.1477(5) 0.092(5) Uani 1 1 d . . . H14 H 0.5544 0.5226 0.1617 0.110 Uiso 1 1 calc R . . C15 C 0.6454(11) 0.5398(12) 0.1144(5) 0.084(5) Uani 1 1 d . . . H15 H 0.6120 0.6009 0.1056 0.100 Uiso 1 1 calc R . . C16 C 0.7310(9) 0.4989(9) 0.0916(4) 0.053(3) Uani 1 1 d . . . C17 C 0.7590(13) 0.5667(10) 0.0562(5) 0.073(4) Uani 1 1 d . . . C18 C 0.8887(16) 0.6162(15) 0.0043(6) 0.134(8) Uani 1 1 d . . . H18A H 0.9566 0.5909 -0.0040 0.161 Uiso 1 1 calc R . . H18B H 0.8945 0.6886 0.0125 0.161 Uiso 1 1 calc R . . H18C H 0.8399 0.6108 -0.0176 0.161 Uiso 1 1 calc R . . C21 C 0.510(2) 0.171(3) 0.0722(11) 0.129(14) Uani 0.50 1 d PDU . . H21A H 0.4757 0.2011 0.0956 0.155 Uiso 0.50 1 calc PR . . H21B H 0.4680 0.1102 0.0644 0.155 Uiso 0.50 1 calc PR . . C22 C 0.608(2) 0.132(2) 0.0849(9) 0.212(15) Uani 0.50 1 d PD . . H22A H 0.5977 0.0827 0.1062 0.255 Uiso 0.50 1 calc PR . . H22B H 0.6505 0.1900 0.0943 0.255 Uiso 0.50 1 calc PR . . H22C H 0.6426 0.0983 0.0629 0.255 Uiso 0.50 1 calc PR . . C22B C 0.608(2) 0.132(2) 0.0849(9) 0.212(15) Uani 0.50 1 d PD . . H22D H 0.6804 0.1185 0.0912 0.255 Uiso 0.50 1 calc PR . . H22E H 0.5732 0.0676 0.0780 0.255 Uiso 0.50 1 calc PR . . H22F H 0.5737 0.1633 0.1077 0.255 Uiso 0.50 1 calc PR . . C23 C 0.593(3) 0.306(4) 0.0256(17) 0.18(2) Uani 0.50 1 d PDU . . H23A H 0.6199 0.3411 0.0492 0.215 Uiso 0.50 1 calc PR . . H23B H 0.6433 0.2511 0.0192 0.215 Uiso 0.50 1 calc PR . . C24 C 0.601(2) 0.374(3) -0.0030(8) 0.206(15) Uani 0.50 1 d PD . . H24A H 0.6736 0.3925 -0.0067 0.247 Uiso 0.50 1 calc PR . . H24B H 0.5613 0.4364 0.0038 0.247 Uiso 0.50 1 calc PR . . H24C H 0.5734 0.3446 -0.0274 0.247 Uiso 0.50 1 calc PR . . C24B C 0.601(2) 0.374(3) -0.0030(8) 0.206(15) Uani 0.50 1 d PD . . H24D H 0.5852 0.4316 -0.0209 0.247 Uiso 0.50 1 calc PR . . H24E H 0.6362 0.3193 -0.0175 0.247 Uiso 0.50 1 calc PR . . H24F H 0.6454 0.3989 0.0182 0.247 Uiso 0.50 1 calc PR . . C25 C 0.514(3) 0.338(4) 0.0119(17) 0.165(18) Uani 0.50 1 d PDU . . H25A H 0.4695 0.3212 -0.0110 0.198 Uiso 0.50 1 calc PR . . H25B H 0.4804 0.3975 0.0250 0.198 Uiso 0.50 1 calc PR . . C26 C 0.602(2) 0.203(3) 0.0521(13) 0.148(15) Uani 0.50 1 d PDU . . H26A H 0.6314 0.1667 0.0291 0.178 Uiso 0.50 1 calc PR . . H26B H 0.6496 0.2612 0.0580 0.178 Uiso 0.50 1 calc PR . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Hg1 0.0441(4) 0.0441(4) 0.0610(7) 0.000 0.000 0.000 S1 0.0545(19) 0.061(2) 0.057(2) 0.0005(16) -0.0003(16) 0.0169(16) O1 0.101(9) 0.086(8) 0.171(13) 0.032(8) -0.026(8) 0.043(7) N1 0.095(10) 0.091(9) 0.075(9) 0.028(7) 0.001(8) 0.015(8) N3 0.036(8) 0.062(10) 0.076(10) 0.000 0.000 0.007(8) C11 0.050(7) 0.063(8) 0.048(8) -0.004(7) -0.009(6) 0.001(6) C12 0.071(9) 0.094(11) 0.093(13) 0.026(9) 0.016(9) 0.045(9) C13 0.095(12) 0.137(16) 0.100(14) 0.016(12) 0.032(11) 0.053(13) C14 0.060(10) 0.137(17) 0.078(13) -0.023(12) 0.002(9) 0.008(10) C15 0.057(9) 0.080(10) 0.114(15) -0.039(10) -0.037(9) 0.032(8) C16 0.055(8) 0.049(7) 0.055(9) -0.016(6) -0.015(6) 0.006(6) C17 0.084(11) 0.047(8) 0.089(12) -0.017(8) -0.036(10) 0.013(8) C18 0.151(19) 0.109(15) 0.142(18) 0.070(14) -0.020(15) 0.033(14) C21 0.10(2) 0.17(3) 0.12(3) 0.09(3) -0.01(2) 0.02(3) C22 0.22(3) 0.15(2) 0.27(4) 0.13(2) -0.07(3) -0.01(2) C22B 0.22(3) 0.15(2) 0.27(4) 0.13(2) -0.07(3) -0.01(2) C23 0.13(4) 0.18(4) 0.23(5) 0.09(4) 0.04(4) -0.03(3) C24 0.24(3) 0.24(3) 0.13(2) 0.08(2) 0.09(2) -0.01(3) C24B 0.24(3) 0.24(3) 0.13(2) 0.08(2) 0.09(2) -0.01(3) C25 0.13(3) 0.14(3) 0.23(5) 0.13(3) 0.02(4) -0.02(3) C26 0.09(2) 0.18(3) 0.17(3) 0.12(3) -0.03(2) 0.00(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Hg Hg -2.3894 9.2266 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag S1 Hg1 S1 98.67(14) 2_755 . ? S1 Hg1 S1 115.13(8) 2_755 15_665 ? S1 Hg1 S1 115.13(8) . 15_665 ? S1 Hg1 S1 115.13(8) 2_755 16_645 ? S1 Hg1 S1 115.13(8) . 16_645 ? S1 Hg1 S1 98.66(14) 15_665 16_645 ? C11 S1 Hg1 107.0(4) . . ? C17 N1 C18 124.5(14) . . ? C17 N1 H1 117.8 . . ? C18 N1 H1 117.8 . . ? C23 N3 C23 143(5) . 2_655 ? C23 N3 C25 106(3) . 2_655 ? C23 N3 C25 48(2) 2_655 2_655 ? C23 N3 C25 48(2) . . ? C23 N3 C25 106(3) 2_655 . ? C25 N3 C25 102(5) 2_655 . ? C23 N3 C26 65.0(18) . . ? C23 N3 C26 127(3) 2_655 . ? C25 N3 C26 89(3) 2_655 . ? C25 N3 C26 112.6(18) . . ? C23 N3 C26 127(3) . 2_655 ? C23 N3 C26 65.0(18) 2_655 2_655 ? C25 N3 C26 112.6(18) 2_655 2_655 ? C25 N3 C26 89(3) . 2_655 ? C26 N3 C26 147(4) . 2_655 ? C23 N3 C21 88(3) . 2_655 ? C23 N3 C21 120(2) 2_655 2_655 ? C25 N3 C21 166(3) 2_655 2_655 ? C25 N3 C21 88(3) . 2_655 ? C26 N3 C21 97(2) . 2_655 ? C26 N3 C21 56.6(19) 2_655 2_655 ? C23 N3 C21 120(2) . . ? C23 N3 C21 88(3) 2_655 . ? C25 N3 C21 88(3) 2_655 . ? C25 N3 C21 166(3) . . ? C26 N3 C21 56.6(19) . . ? C26 N3 C21 97(2) 2_655 . ? C21 N3 C21 85(4) 2_655 . ? C16 C11 C12 116.0(12) . . ? C16 C11 S1 124.3(11) . . ? C12 C11 S1 119.5(10) . . ? C13 C12 C11 124.9(14) . . ? C13 C12 H12 117.6 . . ? C11 C12 H12 117.6 . . ? C12 C13 C14 117.8(17) . . ? C12 C13 H13 121.1 . . ? C14 C13 H13 121.1 . . ? C15 C14 C13 119.4(16) . . ? C15 C14 H14 120.3 . . ? C13 C14 H14 120.3 . . ? C14 C15 C16 122.6(15) . . ? C14 C15 H15 118.7 . . ? C16 C15 H15 118.7 . . ? C11 C16 C15 119.1(14) . . ? C11 C16 C17 127.8(12) . . ? C15 C16 C17 113.1(12) . . ? O1 C17 N1 118.5(16) . . ? O1 C17 C16 122.1(16) . . ? N1 C17 C16 119.3(12) . . ? N1 C18 H18A 109.5 . . ? N1 C18 H18B 109.5 . . ? H18A C18 H18B 109.5 . . ? N1 C18 H18C 109.5 . . ? H18A C18 H18C 109.5 . . ? H18B C18 H18C 109.5 . . ? C22 C21 N3 122(2) . . ? C22 C21 H21A 106.8 . . ? N3 C21 H21A 106.8 . . ? C22 C21 H21B 106.8 . . ? N3 C21 H21B 106.8 . . ? H21A C21 H21B 106.7 . . ? C21 C22 H22A 109.5 . . ? C21 C22 H22B 109.5 . . ? H22A C22 H22B 109.5 . . ? C21 C22 H22C 109.5 . . ? H22A C22 H22C 109.5 . . ? H22B C22 H22C 109.5 . . ? C24 C23 N3 129(3) . . ? C24 C23 H23A 105.1 . . ? N3 C23 H23A 105.1 . . ? C24 C23 H23B 105.1 . . ? N3 C23 H23B 105.1 . . ? H23A C23 H23B 105.9 . . ? C23 C24 H24A 109.5 . . ? C23 C24 H24B 109.5 . . ? H24A C24 H24B 109.5 . . ? C23 C24 H24C 109.5 . . ? H24A C24 H24C 109.5 . . ? H24B C24 H24C 109.5 . . ? N3 C25 H25A 105.3 . . ? N3 C25 H25B 105.3 . . ? H25A C25 H25B 106.0 . . ? N3 C26 H26A 107.0 . . ? N3 C26 H26B 107.0 . . ? H26A C26 H26B 106.8 . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag Hg1 S1 2.551(3) 2_755 ? Hg1 S1 2.551(3) . ? Hg1 S1 2.551(3) 15_665 ? Hg1 S1 2.551(3) 16_645 ? S1 C11 1.774(13) . ? O1 C17 1.232(16) . ? N1 C17 1.322(19) . ? N1 C18 1.47(2) . ? N1 H1 0.8600 . ? N3 C23 1.44(3) . ? N3 C23 1.44(3) 2_655 ? N3 C25 1.45(3) 2_655 ? N3 C25 1.45(3) . ? N3 C26 1.49(2) . ? N3 C26 1.49(2) 2_655 ? N3 C21 1.49(2) 2_655 ? N3 C21 1.49(2) . ? C11 C16 1.386(16) . ? C11 C12 1.393(18) . ? C12 C13 1.36(2) . ? C12 H12 0.9300 . ? C13 C14 1.40(2) . ? C13 H13 0.9300 . ? C14 C15 1.33(2) . ? C14 H14 0.9300 . ? C15 C16 1.424(19) . ? C15 H15 0.9300 . ? C16 C17 1.50(2) . ? C18 H18A 0.9600 . ? C18 H18B 0.9600 . ? C18 H18C 0.9600 . ? C21 C22 1.40(3) . ? C21 H21A 0.9700 . ? C21 H21B 0.9700 . ? C22 H22A 0.9600 . ? C22 H22B 0.9600 . ? C22 H22C 0.9600 . ? C23 C24 1.30(3) . ? C23 H23A 0.9700 . ? C23 H23B 0.9700 . ? C24 H24A 0.9600 . ? C24 H24B 0.9600 . ? C24 H24C 0.9600 . ? C25 H25A 0.9700 . ? C25 H25B 0.9700 . ? C26 H26A 0.9700 . ? C26 H26B 0.9700 . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag S1 Hg1 S1 C11 -178.8(5) 2_755 . . . ? S1 Hg1 S1 C11 -55.8(5) 15_665 . . . ? S1 Hg1 S1 C11 58.1(5) 16_645 . . . ? Hg1 S1 C11 C16 147.0(9) . . . . ? Hg1 S1 C11 C12 -38.3(11) . . . . ? C16 C11 C12 C13 1(2) . . . . ? S1 C11 C12 C13 -174.7(15) . . . . ? C11 C12 C13 C14 3(3) . . . . ? C12 C13 C14 C15 -3(3) . . . . ? C13 C14 C15 C16 1(2) . . . . ? C12 C11 C16 C15 -3.1(17) . . . . ? S1 C11 C16 C15 171.8(9) . . . . ? C12 C11 C16 C17 176.5(13) . . . . ? S1 C11 C16 C17 -8.5(18) . . . . ? C14 C15 C16 C11 3(2) . . . . ? C14 C15 C16 C17 -177.2(14) . . . . ? C18 N1 C17 O1 5(2) . . . . ? C18 N1 C17 C16 -177.4(15) . . . . ? C11 C16 C17 O1 162.1(13) . . . . ? C15 C16 C17 O1 -18.2(18) . . . . ? C11 C16 C17 N1 -15(2) . . . . ? C15 C16 C17 N1 164.4(12) . . . . ? C23 N3 C21 C22 -13(6) . . . . ? C23 N3 C21 C22 141(5) 2_655 . . . ? C25 N3 C21 C22 93(4) 2_655 . . . ? C25 N3 C21 C22 -39(15) . . . . ? C26 N3 C21 C22 3(4) . . . . ? C26 N3 C21 C22 -154(4) 2_655 . . . ? C21 N3 C21 C22 -99(5) 2_655 . . . ? C23 N3 C23 C24 43(6) 2_655 . . . ? C25 N3 C23 C24 81(8) 2_655 . . . ? C25 N3 C23 C24 -10(5) . . . . ? C26 N3 C23 C24 162(8) . . . . ? C26 N3 C23 C24 -54(9) 2_655 . . . ? C21 N3 C23 C24 -99(7) 2_655 . . . ? C21 N3 C23 C24 178(6) . . . . ?