#------------------------------------------------------------------------------ #$Date: 2022-03-03 21:12:05 +0000 (Thu, 03 Mar 2022) $ #$Revision: 273260 $ #$URL: svn://www.crystallography.net/cod/cif/4/51/93/4519353.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4519353 loop_ _publ_author_name 'Pons, Amandine' 'Decaens, Jonathan' 'Najjar, Riham' 'Otog, Nansalmaa' 'Arribat, Mathieu' 'Jolly, Sandrine' 'Couve-Bonnaire, Samuel' 'Sebban, Muriel' 'Coadou, Gael' 'Oulyadi, Hassan' 'Speybrouck, David' 'Iwasa, Seiji' 'Charette, Andr\'e B' 'Poisson, Thomas' 'Jubault, Philippe' _publ_section_title ; Fluorocyclopropane-Containing Proline Analogue: Synthesis and Conformation of an Item in the Peptide Chemist's Toolbox. ; _journal_issue 6 _journal_name_full 'ACS omega' _journal_page_first 4868 _journal_page_last 4878 _journal_paper_doi 10.1021/acsomega.1c05337 _journal_volume 7 _journal_year 2022 _chemical_absolute_configuration rm _chemical_compound_source 'synthesis as described' _chemical_formula_moiety 'C15 H23 F1 N2 O5' _chemical_formula_sum 'C15 H23 F N2 O5' _chemical_formula_weight 330.35 _space_group_IT_number 19 _space_group_name_Hall 'P 2ac 2ab' _space_group_name_H-M_alt 'P 21 21 21' _symmetry_cell_setting orthorhombic _symmetry_Int_Tables_number 19 _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_conform_dict_location ftp://ftp.iucr.org/pub/cif_core.dic _audit_conform_dict_name cif_core.dic _audit_conform_dict_version 2.3 _audit_creation_date 2017-11-14T09:53:11-00:00 _audit_creation_method 'WinGX routine CIF_UPDATE' _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 6.5137(14) _cell_length_b 15.684(3) _cell_length_c 17.611(4) _cell_measurement_reflns_used 1593 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 26.46 _cell_measurement_theta_min 1.74 _cell_measurement_wavelength 0.71073 _cell_volume 1799.2(7) _computing_cell_refinement SMART _computing_data_collection SMART _computing_data_reduction SAINT _computing_molecular_graphics 'Ortep-3 for Windows (Farrugia, 1997)' _computing_publication_material 'WinGX publication routines (Farrugia, 1999)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution SHELXS-97 _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.995 _diffrn_measured_fraction_theta_max 0.995 _diffrn_measurement_device_type 'SMART APEX I Bruker' _diffrn_radiation_monochromator graphite _diffrn_radiation_probe x-ray _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0879 _diffrn_reflns_av_unetI/netI 0.1057 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 19 _diffrn_reflns_limit_k_min -19 _diffrn_reflns_limit_l_max 22 _diffrn_reflns_limit_l_min -21 _diffrn_reflns_number 14303 _diffrn_reflns_theta_full 26.46 _diffrn_reflns_theta_max 26.46 _diffrn_reflns_theta_min 1.74 _exptl_absorpt_coefficient_mu 0.098 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.22 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 704 _exptl_crystal_size_max 0.3 _exptl_crystal_size_mid 0.05 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.408 _refine_diff_density_min -0.107 _refine_diff_density_rms 0.036 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 2.2(18) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.869 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 213 _refine_ls_number_reflns 3690 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.869 _refine_ls_R_factor_all 0.1659 _refine_ls_R_factor_gt 0.0553 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0775P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1275 _refine_ls_wR_factor_ref 0.1603 _reflns_number_gt 1593 _reflns_number_total 3690 _reflns_threshold_expression >2\s(I) _cod_data_source_file ao1c05337_si_001.cif _cod_data_source_block ap1017 _cod_database_code 4519353 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' 'x+1/2, -y+1/2, -z' '-x, y+1/2, -z+1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group C1 C 1.4211(9) 0.8164(4) 0.4692(2) 0.129(2) Uani 1 1 d . . . H1A H 1.386 0.7573 0.4749 0.194 Uiso 1 1 calc R . . H1B H 1.5632 0.8213 0.4554 0.194 Uiso 1 1 calc R . . H1C H 1.3376 0.8413 0.4301 0.194 Uiso 1 1 calc R . . C2 C 1.3835(6) 0.8142(3) 0.6034(2) 0.0682(12) Uani 1 1 d . . . C3 C 1.3430(7) 0.8694(2) 0.6722(2) 0.0613(11) Uani 1 1 d . . . H3 H 1.2342 0.91 0.6593 0.074 Uiso 1 1 calc R . . C4 C 1.5327(7) 0.9194(3) 0.6940(2) 0.0805(13) Uani 1 1 d . . . H4A H 1.5029 0.9544 0.7373 0.121 Uiso 1 1 calc R . . H4B H 1.5738 0.9548 0.6523 0.121 Uiso 1 1 calc R . . H4C H 1.6418 0.8806 0.7063 0.121 Uiso 1 1 calc R . . C5 C 1.0846(6) 0.7815(3) 0.7320(2) 0.0582(10) Uani 1 1 d . . . C6 C 1.0380(6) 0.7147(2) 0.7921(2) 0.0544(10) Uani 1 1 d . . . H6 H 1.1278 0.7214 0.8364 0.065 Uiso 1 1 calc R . . C7 C 1.0599(6) 0.6278(3) 0.7577(2) 0.0649(11) Uani 1 1 d . . . H7 H 1.1627 0.6185 0.7179 0.078 Uiso 1 1 calc R . . C8 C 0.9853(7) 0.5527(3) 0.8040(3) 0.0852(14) Uani 1 1 d . . . H8A H 1.0413 0.4969 0.7923 0.102 Uiso 1 1 calc R . . H8B H 0.9551 0.5622 0.8573 0.102 Uiso 1 1 calc R . . C9 C 0.8505(6) 0.5927(3) 0.7477(2) 0.0664(11) Uani 1 1 d . . . C10 C 0.6960(6) 0.6567(3) 0.7709(2) 0.0662(12) Uani 1 1 d . . . H10A H 0.6335 0.6839 0.7271 0.079 Uiso 1 1 calc R . . H10B H 0.5895 0.6314 0.8021 0.079 Uiso 1 1 calc R . . C11 C 0.7361(7) 0.7765(3) 0.8575(2) 0.0607(10) Uani 1 1 d . . . C12 C 0.8338(8) 0.8917(3) 0.9475(2) 0.0729(13) Uani 1 1 d . . . C13 C 1.0461(8) 0.9202(3) 0.9705(3) 0.1027(16) Uani 1 1 d . . . H13A H 1.1135 0.875 0.9975 0.154 Uiso 1 1 calc R . . H13B H 1.036 0.9695 1.0026 0.154 Uiso 1 1 calc R . . H13C H 1.124 0.9343 0.9259 0.154 Uiso 1 1 calc R . . C14 C 0.7145(9) 0.9624(3) 0.9106(3) 0.1126(18) Uani 1 1 d . . . H14A H 0.7869 0.9821 0.8665 0.169 Uiso 1 1 calc R . . H14B H 0.6986 1.0087 0.9459 0.169 Uiso 1 1 calc R . . H14C H 0.5816 0.9417 0.8959 0.169 Uiso 1 1 calc R . . C15 C 0.7197(9) 0.8526(3) 1.0142(2) 0.1036(17) Uani 1 1 d . . . H15A H 0.5842 0.8364 0.9985 0.155 Uiso 1 1 calc R . . H15B H 0.7104 0.8936 1.0546 0.155 Uiso 1 1 calc R . . H15C H 0.7926 0.8032 1.0318 0.155 Uiso 1 1 calc R . . F1 F 0.7984(4) 0.54678(16) 0.68383(13) 0.0950(9) Uani 1 1 d . . . N1 N 1.2709(5) 0.81641(19) 0.73433(16) 0.0579(8) Uani 1 1 d . . . H1 H 1.3489 0.8076 0.7729 0.069 Uiso 1 1 calc R . . N2 N 0.8209(5) 0.7169(2) 0.81431(18) 0.0625(9) Uani 1 1 d . . . O1 O 1.4116(5) 0.7389(2) 0.60425(17) 0.0907(10) Uani 1 1 d . . . O2 O 1.3852(5) 0.8609(2) 0.54073(16) 0.1020(11) Uani 1 1 d . . . O3 O 0.9605(4) 0.7977(2) 0.68177(16) 0.0804(9) Uani 1 1 d . . . O4 O 0.8807(4) 0.82487(18) 0.89063(14) 0.0694(8) Uani 1 1 d . . . O5 O 0.5502(5) 0.78433(17) 0.86673(15) 0.0725(8) Uani 1 1 d . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.161(6) 0.174(5) 0.053(3) 0.006(3) 0.029(3) -0.005(5) C2 0.055(3) 0.078(3) 0.072(3) 0.007(3) 0.005(2) -0.002(2) C3 0.059(3) 0.060(2) 0.065(3) 0.011(2) 0.007(2) 0.004(2) C4 0.070(3) 0.083(3) 0.089(3) 0.002(2) 0.010(3) -0.011(3) C5 0.049(3) 0.072(3) 0.054(2) -0.010(2) 0.001(2) 0.003(2) C6 0.046(2) 0.068(3) 0.049(2) -0.002(2) 0.0013(18) 0.000(2) C7 0.050(3) 0.072(3) 0.072(3) 0.000(2) 0.008(2) 0.007(2) C8 0.076(3) 0.070(3) 0.109(4) 0.015(3) -0.005(3) -0.001(3) C9 0.062(3) 0.074(3) 0.064(3) -0.010(2) -0.003(2) -0.004(2) C10 0.057(3) 0.076(3) 0.065(2) -0.005(2) -0.001(2) -0.013(2) C11 0.054(3) 0.076(3) 0.052(2) 0.008(2) 0.007(2) -0.001(3) C12 0.097(4) 0.065(3) 0.057(3) -0.012(2) 0.013(3) 0.005(3) C13 0.115(4) 0.101(4) 0.092(3) -0.017(3) -0.015(3) -0.026(3) C14 0.142(5) 0.074(3) 0.121(4) -0.004(3) 0.006(4) 0.015(4) C15 0.131(4) 0.116(4) 0.064(3) -0.006(3) 0.023(3) -0.013(4) F1 0.102(2) 0.0925(17) 0.0901(17) -0.0336(14) -0.0024(15) -0.0095(16) N1 0.045(2) 0.074(2) 0.0551(18) 0.0066(17) 0.0001(16) -0.0049(17) N2 0.047(2) 0.080(2) 0.0601(19) -0.0147(18) 0.0100(17) -0.0035(19) O1 0.108(3) 0.088(2) 0.076(2) -0.0071(19) 0.0112(19) 0.020(2) O2 0.135(3) 0.111(2) 0.0598(19) 0.0225(19) 0.015(2) -0.004(2) O3 0.0575(18) 0.112(2) 0.0721(18) 0.0201(17) -0.0151(16) -0.0083(17) O4 0.0625(19) 0.0820(19) 0.0638(16) -0.0129(16) 0.0062(15) -0.0094(16) O5 0.0532(18) 0.097(2) 0.0675(18) 0.0000(15) 0.0103(15) 0.0036(17) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0 0 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.006 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag O2 C1 H1A 109.5 . . ? O2 C1 H1B 109.5 . . ? H1A C1 H1B 109.5 . . ? O2 C1 H1C 109.5 . . ? H1A C1 H1C 109.5 . . ? H1B C1 H1C 109.5 . . ? O1 C2 O2 123.8(4) . . ? O1 C2 C3 125.6(4) . . ? O2 C2 C3 110.6(4) . . ? N1 C3 C2 109.4(3) . . ? N1 C3 C4 111.7(3) . . ? C2 C3 C4 111.0(3) . . ? N1 C3 H3 108.2 . . ? C2 C3 H3 108.2 . . ? C4 C3 H3 108.2 . . ? C3 C4 H4A 109.5 . . ? C3 C4 H4B 109.5 . . ? H4A C4 H4B 109.5 . . ? C3 C4 H4C 109.5 . . ? H4A C4 H4C 109.5 . . ? H4B C4 H4C 109.5 . . ? O3 C5 N1 122.5(4) . . ? O3 C5 C6 121.0(4) . . ? N1 C5 C6 116.3(4) . . ? N2 C6 C7 102.7(3) . . ? N2 C6 C5 111.2(3) . . ? C7 C6 C5 109.0(3) . . ? N2 C6 H6 111.2 . . ? C7 C6 H6 111.2 . . ? C5 C6 H6 111.2 . . ? C9 C7 C6 107.4(3) . . ? C9 C7 C8 58.6(3) . . ? C6 C7 C8 117.3(3) . . ? C9 C7 H7 119.3 . . ? C6 C7 H7 119.3 . . ? C8 C7 H7 119.3 . . ? C9 C8 C7 59.6(3) . . ? C9 C8 H8A 117.8 . . ? C7 C8 H8A 117.8 . . ? C9 C8 H8B 117.8 . . ? C7 C8 H8B 117.8 . . ? H8A C8 H8B 114.9 . . ? F1 C9 C8 118.4(4) . . ? F1 C9 C10 114.3(3) . . ? C8 C9 C10 120.8(4) . . ? F1 C9 C7 121.2(4) . . ? C8 C9 C7 61.8(3) . . ? C10 C9 C7 110.0(3) . . ? N2 C10 C9 101.8(3) . . ? N2 C10 H10A 111.4 . . ? C9 C10 H10A 111.4 . . ? N2 C10 H10B 111.4 . . ? C9 C10 H10B 111.4 . . ? H10A C10 H10B 109.3 . . ? O5 C11 N2 123.8(4) . . ? O5 C11 O4 125.3(4) . . ? N2 C11 O4 110.8(4) . . ? O4 C12 C14 109.7(3) . . ? O4 C12 C13 101.6(4) . . ? C14 C12 C13 111.8(4) . . ? O4 C12 C15 109.7(3) . . ? C14 C12 C15 112.3(5) . . ? C13 C12 C15 111.1(4) . . ? C12 C13 H13A 109.5 . . ? C12 C13 H13B 109.5 . . ? H13A C13 H13B 109.5 . . ? C12 C13 H13C 109.5 . . ? H13A C13 H13C 109.5 . . ? H13B C13 H13C 109.5 . . ? C12 C14 H14A 109.5 . . ? C12 C14 H14B 109.5 . . ? H14A C14 H14B 109.5 . . ? C12 C14 H14C 109.5 . . ? H14A C14 H14C 109.5 . . ? H14B C14 H14C 109.5 . . ? C12 C15 H15A 109.5 . . ? C12 C15 H15B 109.5 . . ? H15A C15 H15B 109.5 . . ? C12 C15 H15C 109.5 . . ? H15A C15 H15C 109.5 . . ? H15B C15 H15C 109.5 . . ? C5 N1 C3 120.4(3) . . ? C5 N1 H1 119.8 . . ? C3 N1 H1 119.8 . . ? C11 N2 C10 121.6(4) . . ? C11 N2 C6 124.8(3) . . ? C10 N2 C6 112.5(3) . . ? C2 O2 C1 117.1(4) . . ? C11 O4 C12 123.3(3) . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag C1 O2 1.460(5) . ? C1 H1A 0.96 . ? C1 H1B 0.96 . ? C1 H1C 0.96 . ? C2 O1 1.195(5) . ? C2 O2 1.325(5) . ? C2 C3 1.512(6) . ? C3 N1 1.452(4) . ? C3 C4 1.513(6) . ? C3 H3 0.98 . ? C4 H4A 0.96 . ? C4 H4B 0.96 . ? C4 H4C 0.96 . ? C5 O3 1.225(4) . ? C5 N1 1.332(5) . ? C5 C6 1.520(5) . ? C6 N2 1.467(5) . ? C6 C7 1.499(5) . ? C6 H6 0.98 . ? C7 C9 1.481(6) . ? C7 C8 1.513(6) . ? C7 H7 0.98 . ? C8 C9 1.466(6) . ? C8 H8A 0.97 . ? C8 H8B 0.97 . ? C9 F1 1.378(4) . ? C9 C10 1.479(5) . ? C10 N2 1.463(5) . ? C10 H10A 0.97 . ? C10 H10B 0.97 . ? C11 O5 1.228(5) . ? C11 N2 1.327(5) . ? C11 O4 1.342(5) . ? C12 O4 1.482(5) . ? C12 C14 1.502(6) . ? C12 C13 1.509(7) . ? C12 C15 1.520(6) . ? C13 H13A 0.96 . ? C13 H13B 0.96 . ? C13 H13C 0.96 . ? C14 H14A 0.96 . ? C14 H14B 0.96 . ? C14 H14C 0.96 . ? C15 H15A 0.96 . ? C15 H15B 0.96 . ? C15 H15C 0.96 . ? N1 H1 0.86 . ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A N1 H1 O5 0.86 2.14 3.000(4) 178.3 1_655 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag O1 C2 C3 N1 -20.3(6) . . . . ? O2 C2 C3 N1 160.1(4) . . . . ? O1 C2 C3 C4 103.4(5) . . . . ? O2 C2 C3 C4 -76.2(4) . . . . ? O3 C5 C6 N2 -37.4(5) . . . . ? N1 C5 C6 N2 146.8(3) . . . . ? O3 C5 C6 C7 75.2(4) . . . . ? N1 C5 C6 C7 -100.6(4) . . . . ? N2 C6 C7 C9 11.3(4) . . . . ? C5 C6 C7 C9 -106.7(4) . . . . ? N2 C6 C7 C8 -51.8(4) . . . . ? C5 C6 C7 C8 -169.8(4) . . . . ? C6 C7 C8 C9 94.5(4) . . . . ? C7 C8 C9 F1 112.2(4) . . . . ? C7 C8 C9 C10 -97.6(4) . . . . ? C6 C7 C9 F1 140.2(4) . . . . ? C8 C7 C9 F1 -107.9(5) . . . . ? C6 C7 C9 C8 -111.9(4) . . . . ? C6 C7 C9 C10 3.1(4) . . . . ? C8 C7 C9 C10 115.0(4) . . . . ? F1 C9 C10 N2 -156.4(3) . . . . ? C8 C9 C10 N2 52.2(5) . . . . ? C7 C9 C10 N2 -16.1(4) . . . . ? O3 C5 N1 C3 -6.5(5) . . . . ? C6 C5 N1 C3 169.3(3) . . . . ? C2 C3 N1 C5 -70.6(4) . . . . ? C4 C3 N1 C5 166.2(3) . . . . ? O5 C11 N2 C10 2.6(6) . . . . ? O4 C11 N2 C10 -178.9(3) . . . . ? O5 C11 N2 C6 169.2(4) . . . . ? O4 C11 N2 C6 -12.3(5) . . . . ? C9 C10 N2 C11 -167.3(3) . . . . ? C9 C10 N2 C6 24.6(4) . . . . ? C7 C6 N2 C11 169.4(4) . . . . ? C5 C6 N2 C11 -74.1(4) . . . . ? C7 C6 N2 C10 -23.0(4) . . . . ? C5 C6 N2 C10 93.5(4) . . . . ? O1 C2 O2 C1 0.9(7) . . . . ? C3 C2 O2 C1 -179.6(4) . . . . ? O5 C11 O4 C12 4.1(6) . . . . ? N2 C11 O4 C12 -174.3(3) . . . . ? C14 C12 O4 C11 -66.1(5) . . . . ? C13 C12 O4 C11 175.4(3) . . . . ? C15 C12 O4 C11 57.7(5) . . . . ?