#------------------------------------------------------------------------------ #$Date: 2013-01-31 11:30:59 +0000 (Thu, 31 Jan 2013) $ #$Revision: 72862 $ #$URL: svn://www.crystallography.net/cod/cif/7/10/88/7108857.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7108857 loop_ _publ_author_name 'Alexandre Jean' 'Jerome Blanchet' 'Jacques Rouden' 'Jacques Maddaluno' 'Michael De Paolis' _publ_section_title ; Stereoselective access to heteroarylmethylene-substituted pyrrolidines: fully organocatalytic Mannich-hydroamination reactions ; _journal_name_full Chem.Commun. _journal_page_first 1651 _journal_volume 49 _journal_year 2012 _chemical_absolute_configuration ad _chemical_formula_moiety 'C24 H28 N2 O5' _chemical_formula_sum 'C24 H28 N2 O5' _chemical_formula_weight 424.48 _chemical_name_systematic ; ? ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 94.8530(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 6.7414(2) _cell_length_b 8.5308(2) _cell_length_c 20.2800(4) _cell_measurement_reflns_used 7807 _cell_measurement_temperature 291(2) _cell_measurement_theta_max 30.49 _cell_measurement_theta_min 2.59 _cell_volume 1162.11(5) _computing_cell_refinement 'Bruker SAINT' _computing_data_collection 'Bruker APEX2' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 291(2) _diffrn_measured_fraction_theta_full 0.996 _diffrn_measured_fraction_theta_max 0.996 _diffrn_measurement_device_type 'Bruker APEX-II CCD' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0204 _diffrn_reflns_av_sigmaI/netI 0.0244 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 27 _diffrn_reflns_limit_l_min -29 _diffrn_reflns_number 17720 _diffrn_reflns_theta_full 30.92 _diffrn_reflns_theta_max 30.92 _diffrn_reflns_theta_min 2.59 _exptl_absorpt_coefficient_mu 0.085 _exptl_absorpt_correction_type none _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.213 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 452 _exptl_crystal_size_max 0.42 _exptl_crystal_size_mid 0.35 _exptl_crystal_size_min 0.29 _refine_diff_density_max 0.305 _refine_diff_density_min -0.177 _refine_diff_density_rms 0.035 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -0.5(10) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.030 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 283 _refine_ls_number_reflns 7233 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.030 _refine_ls_R_factor_all 0.0569 _refine_ls_R_factor_gt 0.0462 _refine_ls_shift/su_max 0.002 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0739P)^2^+0.1154P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1247 _refine_ls_wR_factor_ref 0.1335 _reflns_number_gt 6118 _reflns_number_total 7233 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file c2cc38954a.txt _[local]_cod_data_source_block jean1_0m _[local]_cod_cif_authors_sg_H-M P21 _cod_database_code 7108857 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags N1 N 0.62768(17) 0.32971(15) 0.29490(6) 0.0378(3) Uani 1 1 d . N2 N 1.04031(18) 0.71248(17) 0.26958(7) 0.0427(3) Uani 1 1 d . O5 O 0.75228(19) -0.12487(15) 0.49124(6) 0.0523(3) Uani 1 1 d . O4 O -0.1390(2) 0.4725(3) 0.06036(7) 0.0920(6) Uani 1 1 d . O2 O 0.6848(2) 0.18222(18) 0.17827(7) 0.0613(3) Uani 1 1 d . O1 O 0.3590(3) 0.1218(2) 0.16358(9) 0.0819(5) Uani 1 1 d . O3 O 0.1429(3) 0.5232(6) 0.02027(9) 0.1681(19) Uani 1 1 d . C4 C 0.75471(18) 0.45315(16) 0.28548(6) 0.0334(3) Uani 1 1 d . C10 C 1.06342(19) 0.60893(17) 0.31977(7) 0.0361(3) Uani 1 1 d . C9 C 0.92277(19) 0.48143(18) 0.32523(7) 0.0367(3) Uani 1 1 d . H9 H 0.9513 0.4114 0.3599 0.044 Uiso 1 1 calc R C18 C 0.7332(2) -0.01705(18) 0.44106(7) 0.0370(3) Uani 1 1 d . C2 C 0.45373(18) 0.4839(2) 0.21423(7) 0.0381(3) Uani 1 1 d . H2 H 0.3726 0.5477 0.2418 0.046 Uiso 1 1 calc R C15 C 0.66548(19) 0.21204(17) 0.34414(6) 0.0338(3) Uani 1 1 d . C6 C 0.3663(2) 0.5010(2) 0.14281(7) 0.0457(4) Uani 1 1 d . H6A H 0.3914 0.6064 0.1276 0.055 Uiso 1 1 calc R H6B H 0.4331 0.4285 0.1152 0.055 Uiso 1 1 calc R C20 C 0.8098(2) 0.09941(19) 0.33874(7) 0.0407(3) Uani 1 1 d . H20 H 0.8848 0.1003 0.3023 0.049 Uiso 1 1 calc R C1 C 0.4635(2) 0.3164(2) 0.24370(7) 0.0409(3) Uani 1 1 d . H1 H 0.3400 0.2940 0.2642 0.049 Uiso 1 1 calc R C19 C 0.8451(2) -0.0157(2) 0.38697(7) 0.0406(3) Uani 1 1 d . H19 H 0.9431 -0.0910 0.3828 0.049 Uiso 1 1 calc R C3 C 0.6693(2) 0.54181(19) 0.22592(7) 0.0404(3) Uani 1 1 d . H3A H 0.7428 0.5195 0.1879 0.049 Uiso 1 1 calc R H3B H 0.6731 0.6538 0.2342 0.049 Uiso 1 1 calc R C16 C 0.5556(2) 0.2107(2) 0.39930(7) 0.0427(3) Uani 1 1 d . H16 H 0.4596 0.2873 0.4040 0.051 Uiso 1 1 calc R C11 C 1.2261(2) 0.6190(2) 0.36783(8) 0.0460(3) Uani 1 1 d . H11 H 1.2402 0.5469 0.4023 0.055 Uiso 1 1 calc R C7 C 0.1440(2) 0.4695(3) 0.13457(8) 0.0532(4) Uani 1 1 d . H7A H 0.1197 0.3625 0.1480 0.064 Uiso 1 1 calc R H7B H 0.0781 0.5387 0.1638 0.064 Uiso 1 1 calc R C17 C 0.5885(2) 0.0960(2) 0.44715(7) 0.0449(3) Uani 1 1 d . H17 H 0.5132 0.0947 0.4835 0.054 Uiso 1 1 calc R C5 C 0.4946(3) 0.1931(2) 0.19130(8) 0.0515(4) Uani 1 1 d . C13 C 1.3403(3) 0.8418(3) 0.31193(11) 0.0638(5) Uani 1 1 d . H13 H 1.4315 0.9223 0.3078 0.077 Uiso 1 1 calc R C14 C 1.1784(3) 0.8250(2) 0.26690(10) 0.0524(4) Uani 1 1 d . H14 H 1.1632 0.8963 0.2322 0.063 Uiso 1 1 calc R C12 C 1.3646(3) 0.7368(2) 0.36336(11) 0.0616(5) Uani 1 1 d . H12 H 1.4730 0.7450 0.3947 0.074 Uiso 1 1 calc R C8 C 0.0546(3) 0.4927(4) 0.06542(9) 0.0678(6) Uani 1 1 d . C24 C 0.9041(4) -0.2385(3) 0.48996(12) 0.0706(6) Uani 1 1 d . H24A H 0.8794 -0.3032 0.4514 0.106 Uiso 1 1 calc R H24B H 0.9058 -0.3025 0.5289 0.106 Uiso 1 1 calc R H24C H 1.0304 -0.1872 0.4887 0.106 Uiso 1 1 calc R C21 C 0.7301(5) 0.0866(3) 0.12163(12) 0.0793(7) Uani 1 1 d . H21A H 0.8582 0.1180 0.1075 0.095 Uiso 1 1 calc R H21B H 0.6302 0.1053 0.0852 0.095 Uiso 1 1 calc R C23 C -0.2447(4) 0.4908(8) -0.00430(15) 0.1398(19) Uani 1 1 d . H23A H -0.2251 0.5952 -0.0202 0.210 Uiso 1 1 calc R H23B H -0.3842 0.4729 -0.0012 0.210 Uiso 1 1 calc R H23C H -0.1949 0.4165 -0.0344 0.210 Uiso 1 1 calc R C22 C 0.7353(7) -0.0815(4) 0.13743(16) 0.1072(11) Uani 1 1 d . H22A H 0.8261 -0.0994 0.1757 0.161 Uiso 1 1 calc R H22B H 0.7785 -0.1391 0.1006 0.161 Uiso 1 1 calc R H22C H 0.6045 -0.1158 0.1463 0.161 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 N1 0.0363(5) 0.0417(6) 0.0341(6) 0.0064(5) -0.0053(4) -0.0107(5) N2 0.0413(6) 0.0387(6) 0.0475(7) 0.0047(5) -0.0002(5) -0.0061(5) O5 0.0640(7) 0.0520(7) 0.0410(6) 0.0137(5) 0.0059(5) 0.0125(6) O4 0.0502(7) 0.1679(19) 0.0539(8) 0.0241(11) -0.0180(6) -0.0094(10) O2 0.0691(8) 0.0656(9) 0.0493(7) -0.0111(6) 0.0058(6) -0.0053(7) O1 0.0829(10) 0.0711(10) 0.0853(11) -0.0142(9) -0.0295(8) -0.0189(9) O3 0.0794(12) 0.371(6) 0.0511(9) 0.061(2) -0.0092(8) -0.049(2) C4 0.0318(5) 0.0352(6) 0.0332(6) 0.0026(5) 0.0025(4) -0.0022(5) C10 0.0350(6) 0.0356(7) 0.0374(6) -0.0021(6) 0.0005(5) -0.0043(5) C9 0.0386(6) 0.0369(6) 0.0337(6) 0.0040(5) -0.0022(5) -0.0053(5) C18 0.0425(6) 0.0364(6) 0.0313(6) 0.0015(5) -0.0020(5) -0.0030(6) C2 0.0295(5) 0.0500(8) 0.0346(6) 0.0080(6) 0.0006(4) -0.0011(5) C15 0.0369(6) 0.0346(6) 0.0293(6) 0.0019(5) -0.0007(4) -0.0077(5) C6 0.0338(6) 0.0657(10) 0.0370(7) 0.0126(7) 0.0001(5) -0.0027(6) C20 0.0414(6) 0.0456(8) 0.0356(6) 0.0001(6) 0.0067(5) -0.0029(6) C1 0.0337(6) 0.0514(8) 0.0362(7) 0.0080(6) -0.0051(5) -0.0107(6) C19 0.0427(7) 0.0407(7) 0.0384(7) -0.0008(6) 0.0028(5) 0.0054(6) C3 0.0326(6) 0.0469(8) 0.0412(7) 0.0120(6) -0.0009(5) -0.0050(5) C16 0.0487(7) 0.0428(7) 0.0374(7) 0.0032(6) 0.0079(6) 0.0081(6) C11 0.0477(7) 0.0457(8) 0.0427(7) 0.0006(7) -0.0077(6) -0.0126(7) C7 0.0368(7) 0.0855(13) 0.0362(7) 0.0122(8) -0.0027(5) -0.0042(8) C17 0.0519(8) 0.0500(8) 0.0342(7) 0.0048(6) 0.0111(6) 0.0072(7) C5 0.0621(10) 0.0487(9) 0.0409(8) 0.0051(7) -0.0125(7) -0.0126(8) C13 0.0606(10) 0.0541(10) 0.0749(13) 0.0005(9) -0.0044(9) -0.0281(9) C14 0.0527(8) 0.0432(8) 0.0612(10) 0.0084(8) 0.0036(7) -0.0094(7) C12 0.0549(9) 0.0620(12) 0.0646(11) -0.0039(9) -0.0142(8) -0.0263(9) C8 0.0492(9) 0.1130(18) 0.0395(8) 0.0138(11) -0.0067(7) -0.0050(11) C24 0.0808(13) 0.0664(13) 0.0642(12) 0.0193(10) 0.0037(10) 0.0286(11) C21 0.117(2) 0.0706(14) 0.0515(11) -0.0120(10) 0.0140(12) 0.0025(14) C23 0.0750(16) 0.270(6) 0.0671(15) 0.034(3) -0.0381(13) -0.008(3) C22 0.166(3) 0.0717(17) 0.0814(19) -0.0010(14) -0.0050(19) 0.0273(19) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C4 N1 C15 123.96(11) C4 N1 C1 113.81(11) C15 N1 C1 121.67(11) C14 N2 C10 117.63(13) C18 O5 C24 118.04(13) C8 O4 C23 117.8(2) C5 O2 C21 117.56(18) C9 C4 N1 123.40(12) C9 C4 C3 129.38(12) N1 C4 C3 107.22(11) N2 C10 C11 121.14(13) N2 C10 C9 120.93(12) C11 C10 C9 117.92(13) C4 C9 C10 127.29(13) C4 C9 H9 116.4 C10 C9 H9 116.4 O5 C18 C19 124.88(14) O5 C18 C17 115.07(12) C19 C18 C17 120.04(13) C6 C2 C3 113.65(11) C6 C2 C1 117.10(14) C3 C2 C1 103.24(11) C6 C2 H2 107.5 C3 C2 H2 107.4 C1 C2 H2 107.5 C20 C15 C16 119.00(13) C20 C15 N1 121.44(12) C16 C15 N1 119.56(13) C7 C6 C2 112.75(12) C7 C6 H6A 109.0 C2 C6 H6A 109.0 C7 C6 H6B 109.0 C2 C6 H6B 109.0 H6A C6 H6B 107.8 C15 C20 C19 121.06(12) C15 C20 H20 119.5 C19 C20 H20 119.5 N1 C1 C5 114.20(13) N1 C1 C2 102.00(11) C5 C1 C2 111.86(12) N1 C1 H1 109.5 C5 C1 H1 109.5 C2 C1 H1 109.5 C18 C19 C20 119.39(14) C18 C19 H19 120.3 C20 C19 H19 120.3 C4 C3 C2 104.84(11) C4 C3 H3A 110.8 C2 C3 H3A 110.8 C4 C3 H3B 110.8 C2 C3 H3B 110.8 H3A C3 H3B 108.9 C17 C16 C15 120.32(14) C17 C16 H16 119.8 C15 C16 H16 119.8 C12 C11 C10 119.40(16) C12 C11 H11 120.3 C10 C11 H11 120.3 C8 C7 C6 113.36(14) C8 C7 H7A 108.9 C6 C7 H7A 108.9 C8 C7 H7B 108.9 C6 C7 H7B 108.9 H7A C7 H7B 107.7 C16 C17 C18 120.17(13) C16 C17 H17 119.9 C18 C17 H17 119.9 O1 C5 O2 125.4(2) O1 C5 C1 122.24(19) O2 C5 C1 112.21(13) C14 C13 C12 118.33(16) C14 C13 H13 120.8 C12 C13 H13 120.8 N2 C14 C13 124.37(17) N2 C14 H14 117.8 C13 C14 H14 117.8 C13 C12 C11 119.13(16) C13 C12 H12 120.4 C11 C12 H12 120.4 O3 C8 O4 122.67(18) O3 C8 C7 125.24(18) O4 C8 C7 112.09(16) O5 C24 H24A 109.5 O5 C24 H24B 109.5 H24A C24 H24B 109.5 O5 C24 H24C 109.5 H24A C24 H24C 109.5 H24B C24 H24C 109.5 O2 C21 C22 112.1(2) O2 C21 H21A 109.2 C22 C21 H21A 109.2 O2 C21 H21B 109.2 C22 C21 H21B 109.2 H21A C21 H21B 107.9 O4 C23 H23A 109.5 O4 C23 H23B 109.5 H23A C23 H23B 109.5 O4 C23 H23C 109.5 H23A C23 H23C 109.5 H23B C23 H23C 109.5 C21 C22 H22A 109.5 C21 C22 H22B 109.5 H22A C22 H22B 109.5 C21 C22 H22C 109.5 H22A C22 H22C 109.5 H22B C22 H22C 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N1 C4 1.3807(17) N1 C15 1.4236(18) N1 C1 1.4569(17) N2 C14 1.341(2) N2 C10 1.3467(19) O5 C18 1.3696(18) O5 C24 1.412(2) O4 C8 1.312(2) O4 C23 1.447(3) O2 C5 1.334(2) O2 C21 1.462(3) O1 C5 1.198(2) O3 C8 1.163(3) C4 C9 1.3554(17) C4 C3 1.4982(19) C10 C11 1.407(2) C10 C9 1.4533(19) C9 H9 0.9300 C18 C19 1.3831(19) C18 C17 1.385(2) C2 C6 1.5240(19) C2 C3 1.5345(18) C2 C1 1.548(2) C2 H2 0.9800 C15 C20 1.378(2) C15 C16 1.3933(19) C6 C7 1.518(2) C6 H6A 0.9700 C6 H6B 0.9700 C20 C19 1.392(2) C20 H20 0.9300 C1 C5 1.522(3) C1 H1 0.9800 C19 H19 0.9300 C3 H3A 0.9700 C3 H3B 0.9700 C16 C17 1.383(2) C16 H16 0.9300 C11 C12 1.380(2) C11 H11 0.9300 C7 C8 1.492(2) C7 H7A 0.9700 C7 H7B 0.9700 C17 H17 0.9300 C13 C14 1.370(3) C13 C12 1.374(3) C13 H13 0.9300 C14 H14 0.9300 C12 H12 0.9300 C24 H24A 0.9600 C24 H24B 0.9600 C24 H24C 0.9600 C21 C22 1.469(4) C21 H21A 0.9700 C21 H21B 0.9700 C23 H23A 0.9600 C23 H23B 0.9600 C23 H23C 0.9600 C22 H22A 0.9600 C22 H22B 0.9600 C22 H22C 0.9600